Variant report
| Variant | rs60336255 |
|---|---|
| Chromosome Location | chr3:143591577-143591578 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs11917171 | 1.00[AMR][1000 genomes] |
| rs11921390 | 1.00[AMR][1000 genomes] |
| rs11928979 | 1.00[AMR][1000 genomes] |
| rs56865417 | 1.00[AMR][1000 genomes] |
| rs57368166 | 1.00[AMR][1000 genomes] |
| rs60513603 | 1.00[AMR][1000 genomes] |
| rs60542095 | 1.00[AMR][1000 genomes] |
| rs60777016 | 1.00[AMR][1000 genomes] |
| rs60831305 | 1.00[AMR][1000 genomes] |
| rs6771320 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6794428 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs72995499 | 1.00[AMR][1000 genomes] |
| rs72997303 | 1.00[AMR][1000 genomes] |
| rs72997304 | 1.00[AMR][1000 genomes] |
| rs73002692 | 1.00[AMR][1000 genomes] |
| rs73010561 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73010568 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73010581 | 1.00[AMR][1000 genomes] |
| rs73010585 | 1.00[AMR][1000 genomes] |
| rs73010586 | 1.00[AMR][1000 genomes] |
| rs73012606 | 1.00[AMR][1000 genomes] |
| rs7615162 | 1.00[AMR][1000 genomes] |
| rs7615541 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1009935 | chr3:143497700-143610852 | Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:143589400-143594600 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
