Variant report
| Variant | rs73012606 |
|---|---|
| Chromosome Location | chr3:143631527-143631528 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs11917171 | 1.00[AMR][1000 genomes] |
| rs11921390 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11928979 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs55868484 | 1.00[AMR][1000 genomes] |
| rs56865417 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs57368166 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs60336255 | 1.00[AMR][1000 genomes] |
| rs60513603 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs60542095 | 1.00[AMR][1000 genomes] |
| rs60777016 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs60831305 | 1.00[AMR][1000 genomes] |
| rs6771320 | 1.00[AMR][1000 genomes] |
| rs6794428 | 1.00[AMR][1000 genomes] |
| rs72995499 | 1.00[AMR][1000 genomes] |
| rs72997303 | 1.00[AMR][1000 genomes] |
| rs72997304 | 1.00[AMR][1000 genomes] |
| rs73002692 | 1.00[AMR][1000 genomes] |
| rs73010561 | 1.00[AMR][1000 genomes] |
| rs73010568 | 1.00[AMR][1000 genomes] |
| rs73010581 | 1.00[AMR][1000 genomes] |
| rs73010585 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73010586 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7615162 | 1.00[AMR][1000 genomes] |
| rs7615541 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv877568 | chr3:143621140-143992630 | Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 34 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:143629800-143640400 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
