Variant report

Variant	rs6771320
Chromosome Location	chr3:143574682-143574683
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11917171	1.00[AMR][1000 genomes]
rs11921390	1.00[AMR][1000 genomes]
rs11928979	1.00[AMR][1000 genomes]
rs56865417	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57368166	1.00[AMR][1000 genomes]
rs60336255	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60513603	1.00[AMR][1000 genomes]
rs60542095	1.00[AMR][1000 genomes]
rs60777016	1.00[AMR][1000 genomes]
rs60831305	1.00[AMR][1000 genomes]
rs6794428	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72995499	1.00[AMR][1000 genomes]
rs72997303	1.00[AMR][1000 genomes]
rs72997304	1.00[AMR][1000 genomes]
rs73002692	1.00[AMR][1000 genomes]
rs73010561	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73010568	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73010581	1.00[AMR][1000 genomes]
rs73010585	1.00[AMR][1000 genomes]
rs73010586	1.00[AMR][1000 genomes]
rs73012606	1.00[AMR][1000 genomes]
rs7615162	1.00[AMR][1000 genomes]
rs7615541	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949288	chr3:142793323-143585882	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv1009935	chr3:143497700-143610852	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:143572800-143574800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
2	chr3:143574000-143574800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links