Variant report

Variant	rs60831305
Chromosome Location	chr3:143640607-143640608
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11917171	1.00[AMR][1000 genomes]
rs11921390	1.00[AMR][1000 genomes]
rs11928979	1.00[AMR][1000 genomes]
rs55868484	1.00[AMR][1000 genomes]
rs56865417	1.00[AMR][1000 genomes]
rs57368166	1.00[AMR][1000 genomes]
rs60336255	1.00[AMR][1000 genomes]
rs60513603	1.00[AMR][1000 genomes]
rs60542095	1.00[AMR][1000 genomes]
rs60777016	1.00[AMR][1000 genomes]
rs6771320	1.00[AMR][1000 genomes]
rs6794428	1.00[AMR][1000 genomes]
rs72995499	1.00[AMR][1000 genomes]
rs72997303	1.00[AMR][1000 genomes]
rs72997304	1.00[AMR][1000 genomes]
rs73002692	1.00[AMR][1000 genomes]
rs73010561	1.00[AMR][1000 genomes]
rs73010568	1.00[AMR][1000 genomes]
rs73010581	1.00[AMR][1000 genomes]
rs73010585	1.00[AMR][1000 genomes]
rs73010586	1.00[AMR][1000 genomes]
rs73012606	1.00[AMR][1000 genomes]
rs7615162	1.00[AMR][1000 genomes]
rs7615541	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877568	chr3:143621140-143992630	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:143637800-143647000	Enhancers	Primary B cells from peripheral blood	blood
2	chr3:143639600-143640800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr3:143639800-143641000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr3:143639800-143643000	Enhancers	Primary B cells from cord blood	blood
5	chr3:143640200-143640800	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr3:143640200-143640800	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr3:143640200-143640800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
8	chr3:143640600-143641400	ZNF genes & repeats	GM12878-XiMat	blood
9	chr3:143640600-143643000	Weak transcription	Primary hematopoietic stem cells	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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