Variant report
| Variant | rs73010585 |
|---|---|
| Chromosome Location | chr3:143609050-143609051 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:3 , 50 per page) page:
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| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000181744 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs11917171 | 1.00[AMR][1000 genomes] |
| rs11921390 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11928979 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs55868484 | 1.00[AMR][1000 genomes] |
| rs56865417 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs57368166 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs60336255 | 1.00[AMR][1000 genomes] |
| rs60513603 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs60542095 | 1.00[AMR][1000 genomes] |
| rs60777016 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs60831305 | 1.00[AMR][1000 genomes] |
| rs6771320 | 1.00[AMR][1000 genomes] |
| rs6794428 | 1.00[AMR][1000 genomes] |
| rs72995499 | 1.00[AMR][1000 genomes] |
| rs72997303 | 1.00[AMR][1000 genomes] |
| rs72997304 | 1.00[AMR][1000 genomes] |
| rs73002692 | 1.00[AMR][1000 genomes] |
| rs73010561 | 1.00[AMR][1000 genomes] |
| rs73010568 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73010581 | 1.00[AMR][1000 genomes] |
| rs73010586 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73012606 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7615162 | 1.00[AMR][1000 genomes] |
| rs7615541 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1009935 | chr3:143497700-143610852 | Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 2 | esv2509262 | chr3:143607895-143609361 | Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:143603600-143616800 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
| 2 | chr3:143607600-143611200 | Weak transcription | H9 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
