Variant report

Variant	rs6040662
Chromosome Location	chr20:11406090-11406091
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs12480062	0.83[AMR][1000 genomes]
rs12480222	0.83[AMR][1000 genomes]
rs12481138	0.83[AMR][1000 genomes]
rs12481718	0.83[AMR][1000 genomes]
rs59106237	0.83[AMR][1000 genomes]
rs6033133	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6033140	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6040639	0.96[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60485829	0.83[AMR][1000 genomes]
rs73245683	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73245698	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73247707	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73247709	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73247714	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73247719	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73247729	0.83[AMR][1000 genomes]
rs73247735	0.83[AMR][1000 genomes]
rs73247736	0.83[AMR][1000 genomes]
rs73247739	0.83[AMR][1000 genomes]
rs73247748	0.83[AMR][1000 genomes]
rs73247759	0.83[AMR][1000 genomes]
rs73247773	0.83[AMR][1000 genomes]
rs73250009	0.83[AMR][1000 genomes]
rs73250010	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1065969	chr20:10850562-11464172	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv544181	chr20:10850562-11464172	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv432099	chr20:11371093-11476900	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1058734	chr20:11389232-11479953	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:11394600-11409800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr20:11402600-11406800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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