Variant report

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs12479989	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12480222	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12481138	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12481579	0.80[AMR][1000 genomes]
rs12481718	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2327416	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57297338	0.90[ASN][1000 genomes]
rs59106237	1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6033133	0.83[AMR][1000 genomes]
rs6033140	0.83[AMR][1000 genomes]
rs6040662	0.83[AMR][1000 genomes]
rs60485829	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73245683	0.95[AMR][1000 genomes]
rs73245698	0.95[AMR][1000 genomes]
rs73247707	0.95[AMR][1000 genomes]
rs73247709	0.83[AMR][1000 genomes]
rs73247714	0.95[AMR][1000 genomes]
rs73247719	0.83[AMR][1000 genomes]
rs73247729	1.00[AMR][1000 genomes]
rs73247735	1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs73247736	1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs73247739	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs73247748	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs73247759	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73247773	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73247785	0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73250009	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73250010	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522929	chr20:11411026-11516418	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:11490800-11510400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr20:11493000-11498400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr20:11496400-11499000	Enhancers	Stomach Mucosa	stomach
4	chr20:11496600-11498000	Enhancers	Fetal Intestine Small	intestine
5	chr20:11496800-11498000	Enhancers	Duodenum Mucosa	Duodenum
6	chr20:11497000-11497800	Enhancers	Fetal Intestine Large	intestine

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