Variant report

Variant	rs73250010
Chromosome Location	chr20:11499596-11499597
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs12479989	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12480062	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12480222	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12481138	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12481579	0.80[AMR][1000 genomes]
rs12481718	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2327416	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57297338	0.90[ASN][1000 genomes]
rs59106237	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6033133	0.83[AMR][1000 genomes]
rs6033140	0.83[AMR][1000 genomes]
rs6040662	0.83[AMR][1000 genomes]
rs60485829	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73245683	0.95[AMR][1000 genomes]
rs73245698	0.95[AMR][1000 genomes]
rs73247707	0.95[AMR][1000 genomes]
rs73247709	0.83[AMR][1000 genomes]
rs73247714	0.95[AMR][1000 genomes]
rs73247719	0.83[AMR][1000 genomes]
rs73247729	1.00[AMR][1000 genomes]
rs73247735	1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs73247736	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs73247739	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs73247748	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs73247759	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73247773	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73247785	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73250009	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522929	chr20:11411026-11516418	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:11490800-11510400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr20:11497800-11504800	Weak transcription	Fetal Intestine Large	intestine
3	chr20:11498000-11502600	Weak transcription	Duodenum Mucosa	Duodenum
4	chr20:11498000-11502600	Weak transcription	Fetal Intestine Small	intestine
5	chr20:11499200-11504000	Enhancers	Breast Myoepithelial Primary Cells	Breast

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