Variant report

Variant	rs73247773
Chromosome Location	chr20:11473752-11473753
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs12479989	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12480062	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12480222	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12481138	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12481579	0.80[AMR][1000 genomes]
rs12481718	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2327416	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57297338	0.90[ASN][1000 genomes]
rs59106237	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6033133	0.83[AMR][1000 genomes]
rs6033140	0.83[AMR][1000 genomes]
rs6040662	0.83[AMR][1000 genomes]
rs60485829	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73245683	0.95[AMR][1000 genomes]
rs73245698	0.95[AMR][1000 genomes]
rs73247707	0.95[AMR][1000 genomes]
rs73247709	0.83[AMR][1000 genomes]
rs73247714	0.95[AMR][1000 genomes]
rs73247719	0.83[AMR][1000 genomes]
rs73247729	1.00[AMR][1000 genomes]
rs73247735	1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs73247736	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs73247739	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs73247748	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs73247759	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73247785	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73250009	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73250010	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432099	chr20:11371093-11476900	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1058734	chr20:11389232-11479953	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv522929	chr20:11411026-11516418	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:11471600-11475000	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr20:11471600-11475600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr20:11472400-11478200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr20:11472400-11479600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr20:11472600-11475000	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr20:11473400-11473800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr20:11473400-11474000	Enhancers	NHEK	skin
8	chr20:11473600-11474000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr20:11473600-11474000	Enhancers	HMEC	breast

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