Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs12479989	0.86[AMR][1000 genomes]
rs12480062	0.95[AMR][1000 genomes]
rs12480222	0.95[AMR][1000 genomes]
rs12481138	0.95[AMR][1000 genomes]
rs12481718	0.95[AMR][1000 genomes]
rs59106237	0.95[AMR][1000 genomes]
rs6033133	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6033140	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6040639	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6040662	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60485829	0.95[AMR][1000 genomes]
rs73245698	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73247707	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73247709	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73247714	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73247719	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73247729	0.95[AMR][1000 genomes]
rs73247735	0.95[AMR][1000 genomes]
rs73247736	0.95[AMR][1000 genomes]
rs73247739	0.95[AMR][1000 genomes]
rs73247748	0.95[AMR][1000 genomes]
rs73247759	0.95[AMR][1000 genomes]
rs73247773	0.95[AMR][1000 genomes]
rs73247785	0.91[AMR][1000 genomes]
rs73250009	0.95[AMR][1000 genomes]
rs73250010	0.95[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1065969	chr20:10850562-11464172	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv544181	chr20:10850562-11464172	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv585415	chr20:11134907-11383327	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv432099	chr20:11371093-11476900	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1061567	chr20:11379484-11405302	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:11376200-11383800	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr20:11376600-11383600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr20:11379400-11383800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr20:11379600-11383800	Weak transcription	Osteobl	bone
5	chr20:11380000-11394200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr20:11380600-11384600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr20:11382600-11383000	Active TSS	Duodenum Mucosa	Duodenum
8	chr20:11382600-11383000	Active TSS	HepG2	liver
9	chr20:11382600-11383000	Active TSS	NHEK	skin
10	chr20:11382600-11383200	Active TSS	GM12878-XiMat	blood
11	chr20:11382800-11383000	Active TSS	Liver	Liver
12	chr20:11382800-11383000	Flanking Active TSS	A549	lung
13	chr20:11382800-11383200	Flanking Active TSS	Dnd41	blood

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