Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs12479989	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12480062	0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12480222	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12481138	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12481718	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2327416	1.00[ASN][1000 genomes]
rs57297338	0.90[ASN][1000 genomes]
rs59106237	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs60485829	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73245683	0.91[AMR][1000 genomes]
rs73245698	0.91[AMR][1000 genomes]
rs73247707	0.91[AMR][1000 genomes]
rs73247714	0.91[AMR][1000 genomes]
rs73247729	0.95[AMR][1000 genomes]
rs73247735	0.95[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs73247736	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs73247739	0.95[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs73247748	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs73247759	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73247773	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73250009	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73250010	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522929	chr20:11411026-11516418	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:11477400-11485600	Weak transcription	A549	lung
2	chr20:11478200-11483800	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr20:11479400-11482800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr20:11481400-11482800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr20:11482200-11483000	Enhancers	Esophagus	oesophagus
6	chr20:11482400-11483000	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr20:11482400-11483400	Weak transcription	NHEK	skin
8	chr20:11482400-11483600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr20:11482400-11490200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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