Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs12479989	0.86[AMR][1000 genomes]
rs12480062	0.95[AMR][1000 genomes]
rs12480222	0.95[AMR][1000 genomes]
rs12481138	0.95[AMR][1000 genomes]
rs12481718	0.95[AMR][1000 genomes]
rs59106237	0.95[AMR][1000 genomes]
rs6033133	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6033140	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6040639	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6040662	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60485829	0.95[AMR][1000 genomes]
rs73245683	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73245698	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73247707	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73247709	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73247719	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73247729	0.95[AMR][1000 genomes]
rs73247735	0.95[AMR][1000 genomes]
rs73247736	0.95[AMR][1000 genomes]
rs73247739	0.95[AMR][1000 genomes]
rs73247748	0.95[AMR][1000 genomes]
rs73247759	0.95[AMR][1000 genomes]
rs73247773	0.95[AMR][1000 genomes]
rs73247785	0.91[AMR][1000 genomes]
rs73250009	0.95[AMR][1000 genomes]
rs73250010	0.95[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1065969	chr20:10850562-11464172	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv544181	chr20:10850562-11464172	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv432099	chr20:11371093-11476900	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1058734	chr20:11389232-11479953	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:11394600-11409800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr20:11406400-11408200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr20:11406400-11408200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr20:11406800-11408000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr20:11407200-11408000	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr20:11407400-11407800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr20:11407600-11407800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr20:11407600-11408000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr20:11407600-11408000	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr20:11407600-11408000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr20:11407600-11408000	Enhancers	Rectal Smooth Muscle	rectum
12	chr20:11407600-11408200	Enhancers	HUES64 Cell Line	embryonic stem cell

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