Variant report

Variant	rs60796663
Chromosome Location	chr10:27146047-27146048
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:27142880..27147228-chr10:27147432..27151509,4	K562	blood:
2	chr10:27144252..27146067-chr10:27147473..27149312,2	K562	blood:
3	chr10:27140612..27143943-chr10:27145359..27148469,3	K562	blood:
4	chr10:27139974..27141536-chr10:27144594..27147018,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000136754	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs55869900	1.00[EUR][1000 genomes]
rs56139006	1.00[EUR][1000 genomes]
rs57564433	1.00[EUR][1000 genomes]
rs57874197	1.00[EUR][1000 genomes]
rs58163077	1.00[EUR][1000 genomes]
rs58178378	1.00[EUR][1000 genomes]
rs58419083	1.00[EUR][1000 genomes]
rs60603294	1.00[EUR][1000 genomes]
rs60897692	1.00[EUR][1000 genomes]
rs7087407	1.00[EUR][1000 genomes]
rs74126830	1.00[EUR][1000 genomes]
rs74126831	1.00[EUR][1000 genomes]
rs74126842	1.00[EUR][1000 genomes]
rs74126847	1.00[EUR][1000 genomes]
rs74126850	1.00[EUR][1000 genomes]
rs74126853	1.00[EUR][1000 genomes]
rs74126856	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74126857	1.00[EUR][1000 genomes]
rs7908945	1.00[EUR][1000 genomes]
rs7917239	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3415799	chr10:26929831-27233591	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv831812	chr10:27061506-27234267	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv971858	chr10:27066006-27157708	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27095600-27148800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr10:27111800-27147000	Weak transcription	Fetal Intestine Large	intestine
3	chr10:27119600-27147200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr10:27124400-27146200	Weak transcription	Fetal Muscle Leg	muscle
5	chr10:27129400-27146400	Weak transcription	Gastric	stomach
6	chr10:27129400-27146600	Weak transcription	Esophagus	oesophagus
7	chr10:27129400-27147200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr10:27129400-27148200	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr10:27129600-27146600	Weak transcription	Stomach Smooth Muscle	stomach
10	chr10:27133600-27146400	Weak transcription	Psoas Muscle	Psoas
11	chr10:27133600-27148200	Weak transcription	Aorta	Aorta
12	chr10:27134000-27146800	Weak transcription	Brain Hippocampus Middle	brain
13	chr10:27135800-27148200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr10:27137000-27146200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr10:27137000-27146800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr10:27138600-27147000	Enhancers	Primary T helper cells PMA-I stimulated	--
17	chr10:27140600-27146800	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr10:27140600-27147000	Weak transcription	Fetal Lung	lung
19	chr10:27140800-27147000	Weak transcription	Brain Cingulate Gyrus	brain
20	chr10:27141000-27146600	Weak transcription	Fetal Intestine Small	intestine
21	chr10:27141000-27147000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr10:27142000-27146600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
23	chr10:27142000-27146800	Weak transcription	NHLF	lung
24	chr10:27142200-27147200	Enhancers	Primary T helper cells fromperipheralblood	blood
25	chr10:27142600-27148000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
26	chr10:27142800-27147000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
27	chr10:27142800-27147400	Enhancers	Primary neutrophils fromperipheralblood	blood
28	chr10:27142800-27147600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
29	chr10:27142800-27147600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
30	chr10:27143000-27147600	Enhancers	Primary T killer memory cells from peripheral blood	blood
31	chr10:27143400-27147000	Enhancers	Primary T cells from cord blood	blood
32	chr10:27143400-27147000	Enhancers	Monocytes-CD14+_RO01746	blood
33	chr10:27143600-27146600	Enhancers	Primary B cells from cord blood	blood
34	chr10:27143600-27147000	Enhancers	Primary hematopoietic stem cells short term culture	blood
35	chr10:27143600-27148000	Enhancers	Sigmoid Colon	Sigmoid Colon
36	chr10:27143600-27148200	Enhancers	Primary monocytes fromperipheralblood	blood
37	chr10:27143800-27147000	Weak transcription	HUES6 Cell Line	embryonic stem cell
38	chr10:27143800-27147000	Weak transcription	HUES64 Cell Line	embryonic stem cell
39	chr10:27143800-27147000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr10:27144200-27147000	Weak transcription	Placenta Amnion	Placenta Amnion
41	chr10:27144400-27146800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr10:27144400-27146800	Enhancers	Dnd41	blood
43	chr10:27144400-27147000	Weak transcription	Thymus	Thymus
44	chr10:27144400-27147200	Weak transcription	Brain Inferior Temporal Lobe	brain
45	chr10:27144600-27146200	Weak transcription	NH-A	brain
46	chr10:27144600-27146400	Enhancers	Primary T helper naive cells from peripheral blood	blood
47	chr10:27144600-27146600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr10:27144600-27146600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr10:27144600-27146600	Weak transcription	HepG2	liver
50	chr10:27144600-27146600	Weak transcription	HMEC	breast

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