Variant report

Variant	rs74126842
Chromosome Location	chr10:27064057-27064058
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:27063322..27065877-chr10:27068617..27071382,2	K562	blood:
2	chr10:27057922..27061577-chr10:27062885..27066099,3	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs2477268	1.00[AMR][1000 genomes]
rs55869900	1.00[EUR][1000 genomes]
rs56139006	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56303834	1.00[EUR][1000 genomes]
rs57564433	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57874197	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58163077	1.00[EUR][1000 genomes]
rs58178378	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58419083	1.00[EUR][1000 genomes]
rs58454707	1.00[EUR][1000 genomes]
rs60603294	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60796663	1.00[EUR][1000 genomes]
rs60897692	1.00[EUR][1000 genomes]
rs7087407	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7093494	1.00[AMR][1000 genomes]
rs7098759	1.00[AMR][1000 genomes]
rs74126830	1.00[EUR][1000 genomes]
rs74126831	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74126847	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74126850	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74126853	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74126856	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74126857	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74128385	1.00[EUR][1000 genomes]
rs7908945	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7913977	1.00[AMR][1000 genomes]
rs7917239	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3415799	chr10:26929831-27233591	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv933544	chr10:27005220-27111998	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv831812	chr10:27061506-27234267	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26988000-27069600	Weak transcription	Colon Smooth Muscle	Colon
2	chr10:27021600-27069600	Weak transcription	Esophagus	oesophagus
3	chr10:27023400-27070000	Weak transcription	Pancreas	Pancrea
4	chr10:27025600-27069600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr10:27025800-27068200	Weak transcription	Spleen	Spleen
6	chr10:27025800-27070800	Weak transcription	Aorta	Aorta
7	chr10:27026000-27069600	Weak transcription	Brain Angular Gyrus	brain
8	chr10:27027400-27069400	Weak transcription	Brain Hippocampus Middle	brain
9	chr10:27027800-27069600	Weak transcription	Rectal Smooth Muscle	rectum
10	chr10:27028200-27068600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr10:27028400-27069800	Weak transcription	NHLF	lung
12	chr10:27029800-27069600	Weak transcription	HSMMtube	muscle
13	chr10:27032000-27068200	Weak transcription	Small Intestine	intestine
14	chr10:27032000-27069600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr10:27032400-27069400	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr10:27032400-27069600	Weak transcription	Lung	lung
17	chr10:27032600-27069800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr10:27033600-27069200	Weak transcription	Psoas Muscle	Psoas
19	chr10:27034000-27069000	Weak transcription	Colonic Mucosa	Colon
20	chr10:27034000-27069600	Weak transcription	Ovary	ovary
21	chr10:27034000-27069800	Weak transcription	Stomach Smooth Muscle	stomach
22	chr10:27034400-27069600	Weak transcription	Right Ventricle	heart
23	chr10:27036800-27068400	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr10:27044800-27064800	Weak transcription	HMEC	breast
25	chr10:27044800-27068000	Weak transcription	K562	blood
26	chr10:27044800-27068400	Weak transcription	A549	lung
27	chr10:27044800-27069000	Weak transcription	Brain Cingulate Gyrus	brain
28	chr10:27044800-27069600	Weak transcription	Muscle Satellite Cultured Cells	--
29	chr10:27044800-27070400	Weak transcription	HUVEC	blood vessel
30	chr10:27044800-27082000	Weak transcription	Fetal Lung	lung
31	chr10:27046000-27065400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr10:27048200-27069400	Weak transcription	NHDF-Ad	bronchial
33	chr10:27051400-27082000	Weak transcription	Fetal Stomach	stomach
34	chr10:27054200-27064600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr10:27054200-27066800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
36	chr10:27054400-27068400	Weak transcription	HUES64 Cell Line	embryonic stem cell
37	chr10:27054600-27065000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr10:27054600-27068400	Weak transcription	Thymus	Thymus
39	chr10:27054800-27067400	Weak transcription	Fetal Muscle Trunk	muscle
40	chr10:27054800-27069000	Weak transcription	H9 Cell Line	embryonic stem cell
41	chr10:27055000-27064800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
42	chr10:27055400-27069000	Weak transcription	HSMM	muscle
43	chr10:27055600-27070200	Weak transcription	Duodenum Smooth Muscle	Duodenum
44	chr10:27056600-27065000	Weak transcription	NH-A	brain
45	chr10:27056600-27067000	Weak transcription	GM12878-XiMat	blood
46	chr10:27056600-27068400	Weak transcription	Duodenum Mucosa	Duodenum
47	chr10:27056600-27069200	Weak transcription	Placenta	Placenta
48	chr10:27057000-27067600	Weak transcription	Primary hematopoietic stem cells	blood
49	chr10:27057200-27069600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr10:27057600-27068600	Weak transcription	Fetal Intestine Small	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links