Variant report

Variant	rs74126831
Chromosome Location	chr10:27026924-27026925
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:27021769..27024487-chr10:27025827..27029432,3	MCF-7	breast:
2	chr10:27025829..27027714-chr10:27034224..27036690,2	K562	blood:

Variant related genes	Relation type
ENSG00000148459	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs55869900	1.00[EUR][1000 genomes]
rs56139006	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56303834	1.00[EUR][1000 genomes]
rs57564433	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57874197	1.00[EUR][1000 genomes]
rs58163077	1.00[EUR][1000 genomes]
rs58178378	1.00[EUR][1000 genomes]
rs58419083	1.00[EUR][1000 genomes]
rs58454707	1.00[EUR][1000 genomes]
rs60603294	1.00[EUR][1000 genomes]
rs60796663	1.00[EUR][1000 genomes]
rs60897692	1.00[EUR][1000 genomes]
rs7087407	1.00[EUR][1000 genomes]
rs74126830	1.00[EUR][1000 genomes]
rs74126842	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74126847	1.00[EUR][1000 genomes]
rs74126850	1.00[EUR][1000 genomes]
rs74126853	1.00[EUR][1000 genomes]
rs74126856	1.00[EUR][1000 genomes]
rs74126857	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74128385	1.00[EUR][1000 genomes]
rs7908945	1.00[EUR][1000 genomes]
rs7914236	0.85[AFR][1000 genomes]
rs7917239	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3415799	chr10:26929831-27233591	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv933544	chr10:27005220-27111998	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26987800-27031200	Weak transcription	NHDF-Ad	bronchial
2	chr10:26988000-27069600	Weak transcription	Colon Smooth Muscle	Colon
3	chr10:26989400-27031000	Weak transcription	Small Intestine	intestine
4	chr10:26994400-27040800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr10:26996200-27028000	Weak transcription	Psoas Muscle	Psoas
6	chr10:26997600-27054400	Weak transcription	Fetal Brain Male	brain
7	chr10:26999800-27037400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr10:27001000-27031800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr10:27001200-27041200	Strong transcription	Fetal Thymus	thymus
10	chr10:27001800-27041200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr10:27004200-27031200	Weak transcription	Hela-S3	cervix
12	chr10:27007800-27041200	Strong transcription	Dnd41	blood
13	chr10:27009600-27032200	Strong transcription	Fetal Muscle Trunk	muscle
14	chr10:27010000-27034600	Strong transcription	Thymus	Thymus
15	chr10:27011000-27027000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr10:27011200-27047400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr10:27011400-27027000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
18	chr10:27012000-27044400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
19	chr10:27015200-27035400	Weak transcription	Stomach Mucosa	stomach
20	chr10:27015800-27032400	Strong transcription	Fetal Stomach	stomach
21	chr10:27016000-27027600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr10:27018000-27036400	Strong transcription	K562	blood
23	chr10:27018000-27038800	Strong transcription	Rectal Mucosa Donor 29	rectum
24	chr10:27019400-27027200	Strong transcription	Fetal Muscle Leg	muscle
25	chr10:27019800-27036000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr10:27020400-27027600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr10:27020400-27035400	Strong transcription	Primary T cells from cord blood	blood
28	chr10:27020600-27028600	Strong transcription	NHEK	skin
29	chr10:27021600-27069600	Weak transcription	Esophagus	oesophagus
30	chr10:27023200-27029200	Weak transcription	HSMMtube	muscle
31	chr10:27023400-27040600	Strong transcription	HUES6 Cell Line	embryonic stem cell
32	chr10:27023400-27057800	Weak transcription	Gastric	stomach
33	chr10:27023400-27070000	Weak transcription	Pancreas	Pancrea
34	chr10:27023600-27032400	Strong transcription	HUES48 Cell Line	embryonic stem cell
35	chr10:27023800-27031800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
36	chr10:27023800-27040600	Strong transcription	Duodenum Mucosa	Duodenum
37	chr10:27024000-27029000	Strong transcription	H1 Cell Line	embryonic stem cell
38	chr10:27024000-27032200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
39	chr10:27024000-27032400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
40	chr10:27024000-27041000	Strong transcription	HUES64 Cell Line	embryonic stem cell
41	chr10:27024000-27047600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
42	chr10:27024000-27048000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr10:27024200-27027400	Strong transcription	Fetal Lung	lung
44	chr10:27024200-27036600	Strong transcription	A549	lung
45	chr10:27024200-27048600	Weak transcription	Fetal Heart	heart
46	chr10:27024400-27027800	Strong transcription	HUVEC	blood vessel
47	chr10:27024400-27028600	Strong transcription	NH-A	brain
48	chr10:27024400-27031800	Weak transcription	Placenta Amnion	Placenta Amnion
49	chr10:27024400-27041000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr10:27024600-27027400	Weak transcription	Brain Cingulate Gyrus	brain

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