Variant report

Variant	rs74126856
Chromosome Location	chr10:27120804-27120805
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs2477268	1.00[AMR][1000 genomes]
rs55869900	1.00[EUR][1000 genomes]
rs56139006	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57564433	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57874197	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58163077	1.00[EUR][1000 genomes]
rs58178378	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58419083	1.00[EUR][1000 genomes]
rs60603294	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60796663	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60897692	1.00[EUR][1000 genomes]
rs7087407	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7093494	1.00[AMR][1000 genomes]
rs7098759	1.00[AMR][1000 genomes]
rs74126830	1.00[EUR][1000 genomes]
rs74126831	1.00[EUR][1000 genomes]
rs74126842	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74126847	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74126850	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74126853	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74126857	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7908945	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7913977	1.00[AMR][1000 genomes]
rs7917239	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3415799	chr10:26929831-27233591	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv831812	chr10:27061506-27234267	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv971858	chr10:27066006-27157708	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	esv11591	chr10:27117697-27135748	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27095000-27130600	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr10:27095000-27138600	Weak transcription	Fetal Muscle Trunk	muscle
3	chr10:27095400-27129800	Weak transcription	NHEK	skin
4	chr10:27095600-27129000	Weak transcription	Right Atrium	heart
5	chr10:27095600-27132600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr10:27095600-27148800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr10:27099800-27128800	Weak transcription	K562	blood
8	chr10:27101800-27129000	Weak transcription	Stomach Mucosa	stomach
9	chr10:27104800-27129200	Weak transcription	Colonic Mucosa	Colon
10	chr10:27105000-27122000	Weak transcription	Brain Cingulate Gyrus	brain
11	chr10:27106600-27122000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr10:27107000-27129000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr10:27107400-27129000	Weak transcription	Spleen	Spleen
14	chr10:27109400-27132600	Weak transcription	HMEC	breast
15	chr10:27110000-27130400	Weak transcription	HUVEC	blood vessel
16	chr10:27111400-27125200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr10:27111800-27129000	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr10:27111800-27129200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr10:27111800-27147000	Weak transcription	Fetal Intestine Large	intestine
20	chr10:27112000-27121000	Weak transcription	NHDF-Ad	bronchial
21	chr10:27112000-27122000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr10:27112000-27126000	Weak transcription	Skeletal Muscle Female	skeletal muscle
23	chr10:27112000-27128800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr10:27112000-27130400	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr10:27112200-27121000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr10:27112200-27121600	Weak transcription	HUES64 Cell Line	embryonic stem cell
27	chr10:27112400-27129000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr10:27112800-27121600	Weak transcription	Left Ventricle	heart
29	chr10:27112800-27125000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr10:27112800-27129000	Weak transcription	Primary B cells from cord blood	blood
31	chr10:27112800-27129000	Weak transcription	Brain Anterior Caudate	brain
32	chr10:27112800-27129000	Weak transcription	Small Intestine	intestine
33	chr10:27115800-27124000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr10:27117600-27121800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr10:27118000-27124600	Enhancers	Primary T helper cells PMA-I stimulated	--
36	chr10:27118400-27121200	Enhancers	Primary T helper cells fromperipheralblood	blood
37	chr10:27118800-27121200	Enhancers	Primary T helper naive cells from peripheral blood	blood
38	chr10:27119400-27129000	Weak transcription	Aorta	Aorta
39	chr10:27119600-27124200	Weak transcription	Fetal Thymus	thymus
40	chr10:27119600-27124800	Weak transcription	Fetal Stomach	stomach
41	chr10:27119600-27126000	Weak transcription	Primary hematopoietic stem cells	blood
42	chr10:27119600-27127200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
43	chr10:27119600-27130400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr10:27119600-27133600	Weak transcription	Thymus	Thymus
45	chr10:27119600-27147200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
46	chr10:27119800-27121000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr10:27119800-27122000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
48	chr10:27119800-27125400	Weak transcription	Primary T cells from cord blood	blood
49	chr10:27119800-27125600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
50	chr10:27120000-27125400	Weak transcription	Primary neutrophils fromperipheralblood	blood

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