Variant report

Variant	rs74126853
Chromosome Location	chr10:27105270-27105271
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:27098834..27102498-chr10:27103196..27108040,4	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs2477268	1.00[AMR][1000 genomes]
rs55869900	1.00[EUR][1000 genomes]
rs56139006	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57564433	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57874197	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58163077	1.00[EUR][1000 genomes]
rs58178378	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58419083	1.00[EUR][1000 genomes]
rs58454707	1.00[EUR][1000 genomes]
rs60603294	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60796663	1.00[EUR][1000 genomes]
rs60897692	1.00[EUR][1000 genomes]
rs7087407	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7093494	1.00[AMR][1000 genomes]
rs7098759	1.00[AMR][1000 genomes]
rs74126830	1.00[EUR][1000 genomes]
rs74126831	1.00[EUR][1000 genomes]
rs74126842	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74126847	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74126850	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74126856	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74126857	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74128385	1.00[EUR][1000 genomes]
rs7908945	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7913977	1.00[AMR][1000 genomes]
rs7917239	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3415799	chr10:26929831-27233591	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv933544	chr10:27005220-27111998	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv831812	chr10:27061506-27234267	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv971858	chr10:27066006-27157708	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27082200-27105400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr10:27085600-27119000	Weak transcription	Fetal Lung	lung
3	chr10:27086600-27110400	Weak transcription	Fetal Intestine Large	intestine
4	chr10:27091800-27113200	Weak transcription	Placenta	Placenta
5	chr10:27093400-27112400	Weak transcription	Left Ventricle	heart
6	chr10:27094000-27108000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr10:27094600-27108400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr10:27094600-27111200	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr10:27094800-27108000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr10:27094800-27111200	Weak transcription	Ovary	ovary
11	chr10:27095000-27130600	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr10:27095000-27138600	Weak transcription	Fetal Muscle Trunk	muscle
13	chr10:27095200-27106600	Weak transcription	Osteobl	bone
14	chr10:27095200-27110800	Weak transcription	Primary hematopoietic stem cells	blood
15	chr10:27095200-27119000	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr10:27095400-27110800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr10:27095400-27111200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr10:27095400-27113000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
19	chr10:27095400-27116200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr10:27095400-27129800	Weak transcription	NHEK	skin
21	chr10:27095600-27105800	Weak transcription	Lung	lung
22	chr10:27095600-27105800	Weak transcription	Thymus	Thymus
23	chr10:27095600-27106000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr10:27095600-27106000	Weak transcription	Aorta	Aorta
25	chr10:27095600-27107800	Weak transcription	Brain Hippocampus Middle	brain
26	chr10:27095600-27109800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr10:27095600-27111000	Weak transcription	HUES64 Cell Line	embryonic stem cell
28	chr10:27095600-27114600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr10:27095600-27115400	Weak transcription	Cortex derived primary cultured neurospheres	brain
30	chr10:27095600-27129000	Weak transcription	Right Atrium	heart
31	chr10:27095600-27132600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr10:27095600-27148800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr10:27095800-27113400	Weak transcription	Duodenum Mucosa	Duodenum
34	chr10:27096600-27106200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
35	chr10:27096800-27105800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
36	chr10:27096800-27106000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr10:27096800-27108200	Weak transcription	Brain Substantia Nigra	brain
38	chr10:27096800-27108200	Weak transcription	Fetal Thymus	thymus
39	chr10:27096800-27110800	Weak transcription	Dnd41	blood
40	chr10:27096800-27112400	Weak transcription	Gastric	stomach
41	chr10:27097200-27120000	Weak transcription	HepG2	liver
42	chr10:27097400-27108800	Weak transcription	Primary T cells from cord blood	blood
43	chr10:27097600-27109800	Weak transcription	Fetal Stomach	stomach
44	chr10:27097800-27110400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr10:27099000-27113800	Weak transcription	Fetal Brain Female	brain
46	chr10:27099200-27107800	Weak transcription	Brain Anterior Caudate	brain
47	chr10:27099200-27108800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
48	chr10:27099800-27106000	Weak transcription	Fetal Intestine Small	intestine
49	chr10:27099800-27128800	Weak transcription	K562	blood
50	chr10:27101000-27108800	Weak transcription	Primary neutrophils fromperipheralblood	blood

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