Variant report

Variant	rs7087407
Chromosome Location	chr10:27070830-27070831
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:27068463..27071008-chr10:27149449..27152029,3	K562	blood:
2	chr10:27064202..27066612-chr10:27068536..27071634,3	K562	blood:
3	chr10:27063322..27065877-chr10:27068617..27071382,2	K562	blood:
4	chr10:27054901..27057514-chr10:27069095..27071711,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000136754	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs2477268	1.00[AMR][1000 genomes]
rs55869900	1.00[EUR][1000 genomes]
rs56139006	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56303834	1.00[EUR][1000 genomes]
rs57564433	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57874197	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58163077	1.00[EUR][1000 genomes]
rs58178378	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58419083	1.00[EUR][1000 genomes]
rs58454707	1.00[EUR][1000 genomes]
rs60603294	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60796663	1.00[EUR][1000 genomes]
rs60897692	1.00[EUR][1000 genomes]
rs7093494	1.00[AMR][1000 genomes]
rs7098759	1.00[AMR][1000 genomes]
rs74126830	1.00[EUR][1000 genomes]
rs74126831	1.00[EUR][1000 genomes]
rs74126842	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74126847	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74126850	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74126853	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74126856	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74126857	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74128385	1.00[EUR][1000 genomes]
rs7908945	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7913977	1.00[AMR][1000 genomes]
rs7917239	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3415799	chr10:26929831-27233591	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv933544	chr10:27005220-27111998	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv831812	chr10:27061506-27234267	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv971858	chr10:27066006-27157708	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv6132	chr10:27066081-27075522	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27044800-27082000	Weak transcription	Fetal Lung	lung
2	chr10:27051400-27082000	Weak transcription	Fetal Stomach	stomach
3	chr10:27057800-27072000	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr10:27058000-27072200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr10:27058000-27079200	Weak transcription	Dnd41	blood
6	chr10:27064600-27074200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
7	chr10:27066200-27074600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
8	chr10:27066400-27074000	Enhancers	Primary T helper cells fromperipheralblood	blood
9	chr10:27066400-27074600	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr10:27066400-27075200	Enhancers	Primary T helper cells PMA-I stimulated	--
11	chr10:27066600-27071200	Enhancers	Primary T helper naive cells from peripheral blood	blood
12	chr10:27066800-27073400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
13	chr10:27067200-27073000	Enhancers	Primary B cells from peripheral blood	blood
14	chr10:27067600-27072200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
15	chr10:27067800-27071000	Enhancers	Rectal Mucosa Donor 29	rectum
16	chr10:27067800-27071200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr10:27067800-27071200	Enhancers	Sigmoid Colon	Sigmoid Colon
18	chr10:27067800-27071400	Enhancers	Primary monocytes fromperipheralblood	blood
19	chr10:27068000-27071200	Enhancers	Rectal Mucosa Donor 31	rectum
20	chr10:27068200-27071000	Flanking Active TSS	GM12878-XiMat	blood
21	chr10:27068200-27071200	Enhancers	Stomach Mucosa	stomach
22	chr10:27068200-27071200	Enhancers	Spleen	Spleen
23	chr10:27068200-27072000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr10:27068400-27071000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr10:27068400-27071200	Enhancers	Duodenum Mucosa	Duodenum
26	chr10:27068400-27071200	Enhancers	Skeletal Muscle Female	skeletal muscle
27	chr10:27068400-27071800	Enhancers	ES-I3 Cell Line	embryonic stem cell
28	chr10:27068400-27072000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr10:27068400-27079400	Weak transcription	Primary hematopoietic stem cells	blood
30	chr10:27068600-27071000	Enhancers	Fetal Intestine Small	intestine
31	chr10:27068600-27071200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr10:27068600-27073000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
33	chr10:27068600-27074200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
34	chr10:27068800-27071000	Enhancers	Skeletal Muscle Male	skeletal muscle
35	chr10:27069000-27071200	Enhancers	H9 Cell Line	embryonic stem cell
36	chr10:27069000-27071200	Enhancers	HUES64 Cell Line	embryonic stem cell
37	chr10:27069000-27071200	Enhancers	Brain Cingulate Gyrus	brain
38	chr10:27069000-27071200	Enhancers	Colonic Mucosa	Colon
39	chr10:27069000-27071600	Enhancers	Primary T cells fromperipheralblood	blood
40	chr10:27069000-27072400	Weak transcription	HepG2	liver
41	chr10:27069000-27073000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
42	chr10:27069200-27071000	Enhancers	Placenta	Placenta
43	chr10:27069200-27071200	Enhancers	Left Ventricle	heart
44	chr10:27069200-27071200	Enhancers	Psoas Muscle	Psoas
45	chr10:27069200-27078800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr10:27069400-27071000	Enhancers	Brain Hippocampus Middle	brain
47	chr10:27069400-27071200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
48	chr10:27069400-27071200	Enhancers	Adipose Nuclei	Adipose
49	chr10:27069400-27071200	Enhancers	Brain Inferior Temporal Lobe	brain
50	chr10:27069400-27071400	Enhancers	Primary T regulatory cells fromperipheralblood	blood

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