Variant report
Variant | rs6080144 |
---|---|
Chromosome Location | chr20:16133105-16133106 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
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No data |
rs_ID | r2[population] |
---|---|
rs1535597 | 0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs17726942 | 0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs1830694 | 0.81[ASN][1000 genomes] |
rs1885943 | 0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs2327989 | 0.84[EUR][1000 genomes] |
rs2486224 | 0.81[ASN][1000 genomes] |
rs4142099 | 0.94[EUR][1000 genomes] |
rs4239715 | 0.84[EUR][1000 genomes] |
rs4239716 | 0.84[EUR][1000 genomes] |
rs4814437 | 0.84[EUR][1000 genomes] |
rs4814439 | 0.84[EUR][1000 genomes] |
rs4814440 | 0.84[EUR][1000 genomes] |
rs6043753 | 0.92[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs6075014 | 0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs6075015 | 0.95[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs6075017 | 0.94[EUR][1000 genomes] |
rs6075018 | 0.94[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs6075019 | 0.94[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs6080128 | 0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs6080131 | 0.89[EUR][1000 genomes] |
rs6080134 | 0.94[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs6080147 | 0.84[EUR][1000 genomes] |
rs6080148 | 0.83[EUR][1000 genomes] |
rs6080154 | 0.81[EUR][1000 genomes] |
rs6110905 | 0.85[EUR][1000 genomes] |
rs6110922 | 0.82[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv869328 | chr20:15325423-16213898 | Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
2 | nsv1059778 | chr20:15999519-16165895 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
3 | nsv544207 | chr20:15999519-16165895 | Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
No data |