Variant report

Variant	rs60935039
Chromosome Location	chr9:86546839-86546840
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:86545280..86547707-chr9:86930734..86934388,3	MCF-7	breast:
2	chr9:86544458..86547106-chr9:86589351..86591605,3	K562	blood:

Variant related genes	Relation type
ENSG00000165119	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469859	chr9:86398152-86587957	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv482641	chr9:86398152-86587957	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	esv2758192	chr9:86414024-86603602	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
4	esv2759701	chr9:86414024-86603602	Enhancers Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
5	nsv8541	chr9:86469723-86593758	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
6	nsv831644	chr9:86534310-86704395	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
7	esv3366490	chr9:86541369-86608868	Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Enhancers Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
8	nsv1043703	chr9:86545917-86603545	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	72 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:86536600-86571000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr9:86537000-86553600	Weak transcription	Fetal Intestine Small	intestine
3	chr9:86537000-86553600	Weak transcription	Thymus	Thymus
4	chr9:86543000-86547000	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr9:86543000-86571000	Weak transcription	Esophagus	oesophagus
6	chr9:86544000-86552400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr9:86545400-86550400	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr9:86545600-86547400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr9:86545800-86548000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr9:86546000-86547800	Enhancers	Dnd41	blood
11	chr9:86546000-86548000	Enhancers	Hela-S3	cervix
12	chr9:86546000-86548600	Enhancers	Monocytes-CD14+_RO01746	blood
13	chr9:86546200-86547400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr9:86546200-86547400	Enhancers	NHEK	skin
15	chr9:86546400-86547200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr9:86546400-86547200	Enhancers	Primary T cells from cord blood	blood
17	chr9:86546400-86547200	Enhancers	Primary hematopoietic stem cells	blood
18	chr9:86546400-86547200	Enhancers	Primary hematopoietic stem cells short term culture	blood
19	chr9:86546400-86547200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
20	chr9:86546400-86547200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr9:86546400-86547400	Weak transcription	GM12878-XiMat	blood
22	chr9:86546400-86550400	Enhancers	Placenta	Placenta
23	chr9:86546600-86547200	Enhancers	HMEC	breast
24	chr9:86546600-86548600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr9:86546800-86553400	Weak transcription	Primary T cells fromperipheralblood	blood
26	chr9:86546800-86553600	Weak transcription	Fetal Thymus	thymus

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