Variant report

Variant	rs61191536
Chromosome Location	chr22:30452627-30452628
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr22:30436980..30439032-chr22:30450263..30452831,2	MCF-7	breast:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs16988115	1.00[AMR][1000 genomes]
rs16988122	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16988151	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28647168	1.00[AMR][1000 genomes]
rs56733052	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57258477	1.00[AMR][1000 genomes]
rs57724305	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58255360	1.00[AMR][1000 genomes]
rs58952888	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs59580785	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs5997540	1.00[AMR][1000 genomes]
rs5997565	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6006297	1.00[AMR][1000 genomes]
rs6006299	1.00[AMR][1000 genomes]
rs6006301	1.00[AMR][1000 genomes]
rs6006309	1.00[AMR][1000 genomes]
rs6006317	1.00[AMR][1000 genomes]
rs6006318	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6006331	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60245742	1.00[AMR][1000 genomes]
rs60964812	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61043203	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61540772	1.00[AMR][1000 genomes]
rs73394851	1.00[AMR][1000 genomes]
rs73394860	1.00[AMR][1000 genomes]
rs73394861	1.00[AMR][1000 genomes]
rs73394863	1.00[AMR][1000 genomes]
rs73394876	1.00[AMR][1000 genomes]
rs73396842	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73396845	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73398604	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73398637	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73398640	1.00[AMR][1000 genomes]
rs73398663	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73400621	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73400633	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73400648	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73400675	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73400689	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73402619	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73402627	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73402640	1.00[AMR][1000 genomes]
rs73402644	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73402647	1.00[AMR][1000 genomes]
rs73402653	1.00[AMR][1000 genomes]
rs73402667	1.00[AMR][1000 genomes]
rs9620939	0.83[AMR][1000 genomes]
rs9625903	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064081	chr22:29826745-30623965	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv544677	chr22:29826745-30623965	Weak transcription Bivalent/Poised TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	nsv829165	chr22:30450894-30459421	Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:30450600-30452800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr22:30451600-30452800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr22:30451600-30452800	Enhancers	Adipose Nuclei	Adipose
4	chr22:30452600-30456200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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