Variant report

Variant	rs73400689
Chromosome Location	chr22:30509476-30509477
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr22:30505986..30512409-chr22:30645938..30650817,6	MCF-7	breast:
2	chr22:30508949..30512192-chr22:30606244..30608279,3	MCF-7	breast:
3	chr22:30504874..30510163-chr22:30602955..30605471,5	MCF-7	breast:
4	chr22:30507793..30510712-chr22:30511298..30514202,2	K562	blood:

Variant related genes	Relation type
ENSG00000225676	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs16988115	1.00[AMR][1000 genomes]
rs16988122	1.00[AMR][1000 genomes]
rs16988151	1.00[AMR][1000 genomes]
rs56733052	1.00[AMR][1000 genomes]
rs57724305	1.00[AMR][1000 genomes]
rs58952888	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs59580785	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs5997565	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6006297	1.00[AMR][1000 genomes]
rs6006299	1.00[AMR][1000 genomes]
rs6006301	1.00[AMR][1000 genomes]
rs6006309	1.00[AMR][1000 genomes]
rs6006317	1.00[AMR][1000 genomes]
rs6006318	1.00[AMR][1000 genomes]
rs6006331	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60964812	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61043203	1.00[AMR][1000 genomes]
rs61191536	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73396842	1.00[AMR][1000 genomes]
rs73396845	1.00[AMR][1000 genomes]
rs73398604	1.00[AMR][1000 genomes]
rs73398637	1.00[AMR][1000 genomes]
rs73398640	1.00[AMR][1000 genomes]
rs73398663	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73400621	0.83[AMR][1000 genomes]
rs73400633	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73400648	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73400675	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73402619	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73402627	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73402640	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73402644	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73402647	1.00[AMR][1000 genomes]
rs73402653	1.00[AMR][1000 genomes]
rs73402667	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9620939	0.83[AMR][1000 genomes]
rs9625903	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064081	chr22:29826745-30623965	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv544677	chr22:29826745-30623965	Weak transcription Bivalent/Poised TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	nsv588884	chr22:30494371-30590026	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:30501800-30511800	Weak transcription	Osteobl	bone
2	chr22:30505800-30509600	Weak transcription	A549	lung
3	chr22:30509400-30509600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links