Variant report

Variant	rs73402667
Chromosome Location	chr22:30587179-30587180
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr22:30584661..30587555-chr22:30606550..30610248,3	MCF-7	breast:
2	chr22:30584790..30588358-chr22:30588911..30595947,7	MCF-7	breast:
3	chr22:30578196..30581092-chr22:30585737..30587811,3	MCF-7	breast:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs16988115	1.00[AMR][1000 genomes]
rs16988122	1.00[AMR][1000 genomes]
rs16988151	1.00[AMR][1000 genomes]
rs16988387	0.80[AFR][1000 genomes]
rs57724305	1.00[AMR][1000 genomes]
rs58952888	0.83[AMR][1000 genomes]
rs59580785	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs5997565	1.00[AMR][1000 genomes]
rs6006317	1.00[AMR][1000 genomes]
rs6006318	1.00[AMR][1000 genomes]
rs6006331	1.00[AMR][1000 genomes]
rs60964812	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61043203	1.00[AMR][1000 genomes]
rs61191536	1.00[AMR][1000 genomes]
rs73398637	1.00[AMR][1000 genomes]
rs73398640	1.00[AMR][1000 genomes]
rs73398663	1.00[AMR][1000 genomes]
rs73400621	0.83[AMR][1000 genomes]
rs73400633	1.00[AMR][1000 genomes]
rs73400648	1.00[AMR][1000 genomes]
rs73400675	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73400689	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73402619	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73402627	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73402640	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73402644	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73402647	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73402653	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9620939	0.83[AMR][1000 genomes]
rs9625903	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064081	chr22:29826745-30623965	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv544677	chr22:29826745-30623965	Weak transcription Bivalent/Poised TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	nsv588884	chr22:30494371-30590026	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv834173	chr22:30515092-30658277	Enhancers ZNF genes & repeats Active TSS Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
5	nsv432239	chr22:30580161-30669883	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:30576200-30588000	Enhancers	Primary neutrophils fromperipheralblood	blood
2	chr22:30577600-30589600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
3	chr22:30577600-30591400	Enhancers	A549	lung
4	chr22:30579600-30591400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr22:30580000-30588200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr22:30580200-30591400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr22:30581000-30588200	Weak transcription	Dnd41	blood
8	chr22:30581200-30591400	Weak transcription	Gastric	stomach
9	chr22:30581400-30589600	Weak transcription	Pancreas	Pancrea
10	chr22:30582200-30591400	Enhancers	HepG2	liver
11	chr22:30582800-30591200	Weak transcription	Stomach Mucosa	stomach
12	chr22:30582800-30591400	Weak transcription	Fetal Intestine Large	intestine
13	chr22:30583600-30588400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr22:30583800-30587400	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr22:30583800-30587800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr22:30583800-30587800	Enhancers	NHDF-Ad	bronchial
17	chr22:30583800-30592200	Weak transcription	Small Intestine	intestine
18	chr22:30584400-30588200	Weak transcription	Primary T cells from cord blood	blood
19	chr22:30584400-30588200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr22:30584400-30591400	Weak transcription	HUES48 Cell Line	embryonic stem cell
21	chr22:30584400-30592000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
22	chr22:30584600-30588000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr22:30584800-30588200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
24	chr22:30584800-30591800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr22:30585000-30588200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
26	chr22:30585000-30591800	Enhancers	Primary hematopoietic stem cells short term culture	blood
27	chr22:30585200-30590000	Enhancers	HSMMtube	muscle
28	chr22:30585400-30587400	Weak transcription	Primary T helper cells fromperipheralblood	blood
29	chr22:30585400-30588000	Weak transcription	Primary T helper cells PMA-I stimulated	--
30	chr22:30585400-30591400	Weak transcription	HUES6 Cell Line	embryonic stem cell
31	chr22:30585600-30587200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr22:30585600-30590600	Enhancers	Primary hematopoietic stem cells	blood
33	chr22:30586000-30587600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr22:30586200-30587800	Enhancers	Fetal Stomach	stomach
35	chr22:30586200-30588800	Enhancers	HSMM	muscle
36	chr22:30586400-30587200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr22:30586400-30587400	Enhancers	Placenta	Placenta
38	chr22:30586400-30587600	Enhancers	Fetal Lung	lung
39	chr22:30586400-30588600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr22:30586400-30589000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
41	chr22:30586400-30589000	Enhancers	Muscle Satellite Cultured Cells	--
42	chr22:30586400-30589400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
43	chr22:30586400-30591600	Enhancers	Primary B cells from cord blood	blood
44	chr22:30586600-30587200	Enhancers	Monocytes-CD14+_RO01746	blood
45	chr22:30586600-30587400	Enhancers	Fetal Muscle Leg	muscle
46	chr22:30586600-30587800	Enhancers	NH-A	brain
47	chr22:30586600-30588200	Weak transcription	GM12878-XiMat	blood
48	chr22:30586600-30588400	Enhancers	Osteobl	bone
49	chr22:30586600-30590600	Weak transcription	Spleen	Spleen
50	chr22:30586800-30587200	Enhancers	NHLF	lung

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