Variant report
Variant | rs73400648 |
---|---|
Chromosome Location | chr22:30466691-30466692 |
allele | C/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs16988115 | 1.00[AMR][1000 genomes] |
rs16988122 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs16988151 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs28647168 | 1.00[AMR][1000 genomes] |
rs56733052 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs57724305 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs58952888 | 0.92[AFR][1000 genomes];0.83[AMR][1000 genomes] |
rs59580785 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs5997565 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs6006297 | 1.00[AMR][1000 genomes] |
rs6006299 | 1.00[AMR][1000 genomes] |
rs6006301 | 1.00[AMR][1000 genomes] |
rs6006309 | 1.00[AMR][1000 genomes] |
rs6006317 | 1.00[AMR][1000 genomes] |
rs6006318 | 1.00[AMR][1000 genomes] |
rs6006331 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs60964812 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs61043203 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs61191536 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs61540772 | 1.00[AMR][1000 genomes] |
rs73394863 | 1.00[AMR][1000 genomes] |
rs73394876 | 1.00[AMR][1000 genomes] |
rs73396842 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73396845 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73398604 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73398637 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73398640 | 1.00[AMR][1000 genomes] |
rs73398663 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73400621 | 0.83[AMR][1000 genomes] |
rs73400633 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73400675 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73400689 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73402619 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73402627 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73402640 | 1.00[AMR][1000 genomes] |
rs73402644 | 1.00[AMR][1000 genomes] |
rs73402647 | 1.00[AMR][1000 genomes] |
rs73402653 | 1.00[AMR][1000 genomes] |
rs73402667 | 1.00[AMR][1000 genomes] |
rs9620939 | 0.83[AMR][1000 genomes] |
rs9625903 | 0.83[AMR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1064081 | chr22:29826745-30623965 | Enhancers Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 47 gene(s) | inside rSNPs | diseases |
2 | nsv544677 | chr22:29826745-30623965 | Weak transcription Bivalent/Poised TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 47 gene(s) | inside rSNPs | diseases |
3 | nsv819812 | chr22:30453933-30470372 | Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS | n/a | n/a | inside rSNPs | diseases |
4 | nsv829168 | chr22:30456513-30470312 | Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS | n/a | n/a | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr22:30461600-30474600 | Weak transcription | iPS-15b Cell Line | embryonic stem cell |