Variant report

Variant	rs612391
Chromosome Location	chr7:124715566-124715567
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs1020629	0.93[CHB][hapmap]
rs10256073	0.93[CHB][hapmap];0.93[JPT][hapmap];0.82[YRI][hapmap]
rs10266152	0.93[CHB][hapmap];0.93[JPT][hapmap];0.80[YRI][hapmap];0.81[ASN][1000 genomes]
rs1031952	0.93[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.97[ASN][1000 genomes]
rs10500102	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs10954061	0.93[CHB][hapmap];0.93[JPT][hapmap];0.89[YRI][hapmap]
rs11761435	0.93[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap]
rs11771004	0.85[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap]
rs11771079	0.93[CHB][hapmap]
rs1248737	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12531213	0.90[ASN][1000 genomes]
rs12706627	0.84[CHB][hapmap];0.91[JPT][hapmap]
rs1404897	0.93[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap]
rs1471570	0.93[CHB][hapmap];0.93[JPT][hapmap];0.86[YRI][hapmap]
rs1481334	0.81[ASN][1000 genomes]
rs1525620	0.82[CHB][hapmap]
rs1552116	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1552117	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1568882	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17147723	0.93[CHB][hapmap];0.93[JPT][hapmap];0.89[YRI][hapmap]
rs17147889	0.93[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs2929321	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2929322	0.93[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2968868	0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs34246481	0.93[CHB][hapmap]
rs585988	0.91[EUR][1000 genomes]
rs590516	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs598102	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs625037	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs627823	0.85[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs650653	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs651988	0.84[CEU][hapmap];0.93[CHB][hapmap];0.93[JPT][hapmap];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs659269	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs663056	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs664062	0.84[CEU][hapmap];0.93[CHB][hapmap];0.93[JPT][hapmap];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs669273	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs670910	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs671359	0.85[CEU][hapmap];0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6965957	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs7791488	0.82[YRI][hapmap]
rs7797011	0.93[CHB][hapmap]
rs967297	0.93[CHB][hapmap];0.93[JPT][hapmap];0.80[YRI][hapmap];0.81[ASN][1000 genomes]
rs9785002	0.93[CHB][hapmap]
rs9942625	0.93[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429809	chr7:123937674-124835925	Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	49 gene(s)	inside rSNPs	diseases
2	nsv889139	chr7:124600505-124767295	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	esv3394090	chr7:124602150-124900799	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
4	nsv464708	chr7:124703756-124805279	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
5	nsv608344	chr7:124703756-124805279	Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
6	nsv831119	chr7:124714009-124890119	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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