Variant report

Variant	rs61246394
Chromosome Location	chr10:91310783-91310784
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11185834	1.00[AMR][1000 genomes]
rs11185847	1.00[AMR][1000 genomes]
rs11185856	1.00[AMR][1000 genomes]
rs11185859	1.00[AMR][1000 genomes]
rs11185860	1.00[AMR][1000 genomes]
rs11185863	1.00[AMR][1000 genomes]
rs12243201	1.00[AMR][1000 genomes]
rs12243754	1.00[AMR][1000 genomes]
rs12245986	1.00[AMR][1000 genomes]
rs12249226	1.00[AMR][1000 genomes]
rs12250112	1.00[AMR][1000 genomes]
rs12250364	1.00[AMR][1000 genomes]
rs12253366	1.00[AMR][1000 genomes]
rs12260674	1.00[AMR][1000 genomes]
rs12264995	1.00[AMR][1000 genomes]
rs12267178	1.00[AMR][1000 genomes]
rs59978417	1.00[AMR][1000 genomes]
rs7090381	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv1041964	chr10:90861380-91378356	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91305000-91315600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr10:91307800-91310800	Enhancers	Stomach Mucosa	stomach
3	chr10:91308600-91311000	Enhancers	Hela-S3	cervix
4	chr10:91308800-91314000	Weak transcription	Pancreas	Pancrea
5	chr10:91309200-91310800	Enhancers	A549	lung
6	chr10:91309200-91312200	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr10:91310000-91312400	Weak transcription	HMEC	breast
8	chr10:91310400-91310800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr10:91310400-91312600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr10:91310600-91310800	Enhancers	Muscle Satellite Cultured Cells	--
11	chr10:91310600-91310800	Enhancers	HSMMtube	muscle
12	chr10:91310600-91310800	Enhancers	NHEK	skin
13	chr10:91310600-91310800	Enhancers	Osteobl	bone
14	chr10:91310600-91311000	Flanking Active TSS	Fetal Heart	heart
15	chr10:91310600-91312200	Weak transcription	HSMM	muscle
16	chr10:91310600-91312400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr10:91310600-91312400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr10:91310600-91312400	Weak transcription	NH-A	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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