Variant report

Variant	rs11185860
Chromosome Location	chr10:91481907-91481908
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr10:91481725-91482223	K562	blood:	n/a	n/a
2	POLR2A	chr10:91481871-91481942	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr10:91480234..91482743-chr10:91496635..91498864,2	K562	blood:
2	chr10:91480506..91482612-chr10:91483593..91486350,2	K562	blood:
3	chr10:91480310..91482900-chr10:91491265..91493358,2	K562	blood:

Variant related genes	Relation type
KIF20B	TF binding region

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11185834	1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11185847	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11185856	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11185859	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11185863	1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12243201	1.00[AMR][1000 genomes]
rs12243754	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12245986	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12248074	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12249226	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12250112	1.00[AMR][1000 genomes]
rs12250364	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12253366	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12255116	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12260674	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12261302	0.82[AFR][1000 genomes]
rs12263925	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12264995	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12267178	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12267287	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12267623	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12268389	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59978417	1.00[AMR][1000 genomes]
rs61246394	1.00[AMR][1000 genomes]
rs7090381	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7358158	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7358171	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054572	chr10:91471956-91537070	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv1046241	chr10:91478562-91614437	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91461600-91546600	Weak transcription	Small Intestine	intestine
2	chr10:91461800-91505800	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr10:91462000-91505800	Weak transcription	Left Ventricle	heart
4	chr10:91462200-91482400	Weak transcription	Pancreas	Pancrea
5	chr10:91462200-91486400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr10:91462200-91505600	Weak transcription	Esophagus	oesophagus
7	chr10:91462200-91505800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr10:91462200-91505800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr10:91462200-91505800	Weak transcription	Gastric	stomach
10	chr10:91462200-91505800	Weak transcription	Lung	lung
11	chr10:91462400-91484600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr10:91462400-91488600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr10:91462400-91505600	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr10:91463400-91484200	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr10:91463400-91505600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
16	chr10:91463400-91505800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr10:91463400-91521600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr10:91464000-91486800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr10:91465800-91505600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr10:91466200-91484200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr10:91466600-91506800	Strong transcription	HUES64 Cell Line	embryonic stem cell
22	chr10:91467000-91491000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
23	chr10:91467200-91489000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr10:91467200-91489000	Weak transcription	K562	blood
25	chr10:91467200-91505600	Weak transcription	Fetal Brain Female	brain
26	chr10:91467400-91498200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
27	chr10:91467600-91538400	Weak transcription	Fetal Heart	heart
28	chr10:91467800-91507200	Weak transcription	Fetal Brain Male	brain
29	chr10:91468600-91488000	Weak transcription	Aorta	Aorta
30	chr10:91468800-91506600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
31	chr10:91469200-91505000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr10:91469400-91494800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr10:91469600-91523600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr10:91470000-91503800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr10:91470200-91484600	Weak transcription	Ovary	ovary
36	chr10:91470200-91505800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr10:91470400-91486600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr10:91470400-91494800	Strong transcription	HUES48 Cell Line	embryonic stem cell
39	chr10:91472400-91484000	Weak transcription	Thymus	Thymus
40	chr10:91472600-91530200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
41	chr10:91473600-91505600	Weak transcription	Rectal Mucosa Donor 29	rectum
42	chr10:91473800-91505800	Weak transcription	Liver	Liver
43	chr10:91474200-91482200	Strong transcription	Monocytes-CD14+_RO01746	blood
44	chr10:91474400-91482000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
45	chr10:91474600-91482000	Strong transcription	Hela-S3	cervix
46	chr10:91474600-91486600	Weak transcription	Brain Germinal Matrix	brain
47	chr10:91474600-91530200	Weak transcription	Placenta Amnion	Placenta Amnion
48	chr10:91474800-91482200	Strong transcription	Dnd41	blood
49	chr10:91475000-91494800	Strong transcription	HUES6 Cell Line	embryonic stem cell
50	chr10:91475200-91482200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell

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