Variant report

Variant	rs12249226
Chromosome Location	chr10:91425810-91425811
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:91423205..91426189-chr10:91428297..91431158,2	K562	blood:
2	chr10:91403557..91405807-chr10:91422817..91427702,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000249962	Chromatin interaction
ENSG00000152782	Chromatin interaction
ENSG00000232936	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11185834	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11185847	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11185856	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11185859	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11185860	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11185863	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs12243201	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12243754	1.00[YRI][hapmap];0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12245986	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12248074	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12250112	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12250364	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12253366	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12255116	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12260674	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12263925	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12264995	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12267178	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12267287	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12267623	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12268389	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59978417	1.00[AMR][1000 genomes]
rs61246394	1.00[AMR][1000 genomes]
rs7090381	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7358158	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7358171	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91424400-91428000	Weak transcription	Fetal Heart	heart
2	chr10:91424600-91428200	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr10:91425400-91428400	Weak transcription	Fetal Muscle Leg	muscle
4	chr10:91425400-91430000	Weak transcription	HSMMtube	muscle
5	chr10:91425800-91426000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr10:91425800-91428200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr10:91425800-91428200	Weak transcription	HMEC	breast
8	chr10:91425800-91428200	Weak transcription	NHEK	skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links