Variant report

Variant	rs11185856
Chromosome Location	chr10:91477897-91477898
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:91464267..91466321-chr10:91476924..91479162,2	K562	blood:
2	chr10:91469218..91474577-chr10:91475007..91479168,10	K562	blood:
3	chr10:91474969..91476906-chr10:91477130..91479162,2	K562	blood:
4	chr10:91477849..91480081-chr10:91482106..91484005,3	K562	blood:

Variant related genes	Relation type
ENSG00000138182	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11185834	1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11185847	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11185859	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11185860	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11185863	1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12243201	1.00[AMR][1000 genomes]
rs12243754	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12245986	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12248074	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12249226	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12250112	1.00[AMR][1000 genomes]
rs12250364	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12253366	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12255116	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12260674	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12261302	0.82[AFR][1000 genomes]
rs12263925	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12264995	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12267178	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12267287	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12267623	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12268389	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59978417	1.00[AMR][1000 genomes]
rs61246394	1.00[AMR][1000 genomes]
rs7090381	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7358158	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7358171	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054572	chr10:91471956-91537070	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91461600-91546600	Weak transcription	Small Intestine	intestine
2	chr10:91461800-91505800	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr10:91462000-91505800	Weak transcription	Left Ventricle	heart
4	chr10:91462200-91478000	Weak transcription	Fetal Muscle Trunk	muscle
5	chr10:91462200-91480400	Weak transcription	Fetal Stomach	stomach
6	chr10:91462200-91480600	Weak transcription	Fetal Muscle Leg	muscle
7	chr10:91462200-91482400	Weak transcription	Pancreas	Pancrea
8	chr10:91462200-91486400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr10:91462200-91505600	Weak transcription	Esophagus	oesophagus
10	chr10:91462200-91505800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr10:91462200-91505800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr10:91462200-91505800	Weak transcription	Gastric	stomach
13	chr10:91462200-91505800	Weak transcription	Lung	lung
14	chr10:91462400-91479200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
15	chr10:91462400-91480000	Weak transcription	Fetal Kidney	kidney
16	chr10:91462400-91480600	Weak transcription	Primary T cells from cord blood	blood
17	chr10:91462400-91480600	Weak transcription	Fetal Intestine Small	intestine
18	chr10:91462400-91484600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
19	chr10:91462400-91488600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
20	chr10:91462400-91505600	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr10:91463400-91480600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr10:91463400-91484200	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr10:91463400-91505600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
24	chr10:91463400-91505800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr10:91463400-91521600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr10:91464000-91486800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr10:91465600-91479400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
28	chr10:91465800-91505600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr10:91466200-91484200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr10:91466600-91506800	Strong transcription	HUES64 Cell Line	embryonic stem cell
31	chr10:91467000-91491000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
32	chr10:91467200-91489000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr10:91467200-91489000	Weak transcription	K562	blood
34	chr10:91467200-91505600	Weak transcription	Fetal Brain Female	brain
35	chr10:91467400-91498200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
36	chr10:91467600-91538400	Weak transcription	Fetal Heart	heart
37	chr10:91467800-91507200	Weak transcription	Fetal Brain Male	brain
38	chr10:91468600-91488000	Weak transcription	Aorta	Aorta
39	chr10:91468800-91506600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
40	chr10:91469200-91505000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
41	chr10:91469400-91494800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr10:91469600-91523600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr10:91470000-91503800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr10:91470200-91484600	Weak transcription	Ovary	ovary
45	chr10:91470200-91505800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr10:91470400-91486600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr10:91470400-91494800	Strong transcription	HUES48 Cell Line	embryonic stem cell
48	chr10:91470800-91478800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr10:91471000-91480600	Weak transcription	NHLF	lung
50	chr10:91472400-91484000	Weak transcription	Thymus	Thymus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links