Variant report

Variant	rs12268389
Chromosome Location	chr10:91515863-91515864
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:91513182..91515902-chr10:91528311..91529993,2	K562	blood:
2	chr10:91509935..91511700-chr10:91515094..91517024,2	MCF-7	breast:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11185834	1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11185847	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11185856	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11185859	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11185860	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11185863	1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12243201	1.00[AMR][1000 genomes]
rs12243754	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12245986	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12248074	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12249226	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12250112	1.00[AMR][1000 genomes]
rs12250364	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12253366	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12255116	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12260674	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12261302	0.82[AFR][1000 genomes]
rs12263925	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12264995	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12267178	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12267287	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12267623	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59978417	1.00[AMR][1000 genomes]
rs7090381	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7358158	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7358171	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054572	chr10:91471956-91537070	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv1046241	chr10:91478562-91614437	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv869080	chr10:91498641-91712834	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91461600-91546600	Weak transcription	Small Intestine	intestine
2	chr10:91463400-91521600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr10:91467600-91538400	Weak transcription	Fetal Heart	heart
4	chr10:91469600-91523600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr10:91472600-91530200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr10:91474600-91530200	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr10:91476000-91522400	Weak transcription	Placenta	Placenta
8	chr10:91478400-91524200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr10:91478400-91542400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr10:91479600-91522400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr10:91480800-91542200	Weak transcription	Fetal Kidney	kidney
12	chr10:91483200-91523600	Weak transcription	Brain Hippocampus Middle	brain
13	chr10:91485000-91532600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr10:91489800-91520400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr10:91492000-91522000	Weak transcription	Adipose Nuclei	Adipose
16	chr10:91498400-91518200	Weak transcription	K562	blood
17	chr10:91499200-91518000	Weak transcription	NHDF-Ad	bronchial
18	chr10:91504200-91531800	Weak transcription	Colon Smooth Muscle	Colon
19	chr10:91504200-91544200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr10:91505000-91536600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
21	chr10:91506000-91520200	Weak transcription	Osteobl	bone
22	chr10:91506200-91520200	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr10:91506200-91522000	Weak transcription	Fetal Muscle Leg	muscle
24	chr10:91506400-91518200	Weak transcription	NH-A	brain
25	chr10:91506400-91518600	Weak transcription	HMEC	breast
26	chr10:91506400-91519000	Weak transcription	Primary T cells fromperipheralblood	blood
27	chr10:91506400-91519000	Weak transcription	Liver	Liver
28	chr10:91506400-91519200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr10:91506400-91519800	Weak transcription	Primary T cells from cord blood	blood
30	chr10:91506400-91519800	Weak transcription	Fetal Muscle Trunk	muscle
31	chr10:91506400-91520000	Weak transcription	NHLF	lung
32	chr10:91506400-91520400	Weak transcription	Rectal Mucosa Donor 29	rectum
33	chr10:91506400-91521200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr10:91506400-91521600	Weak transcription	Left Ventricle	heart
35	chr10:91506400-91521800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr10:91506400-91531200	Weak transcription	Esophagus	oesophagus
37	chr10:91506400-91539800	Weak transcription	Sigmoid Colon	Sigmoid Colon
38	chr10:91506400-91541200	Weak transcription	Rectal Mucosa Donor 31	rectum
39	chr10:91506400-91543800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
40	chr10:91506400-91544800	Weak transcription	Ovary	ovary
41	chr10:91506400-91549000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr10:91506600-91518400	Weak transcription	Primary T helper cells fromperipheralblood	blood
43	chr10:91506600-91519000	Weak transcription	Fetal Intestine Large	intestine
44	chr10:91506600-91519000	Weak transcription	Fetal Lung	lung
45	chr10:91506600-91519200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr10:91506600-91519800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
47	chr10:91506600-91519800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
48	chr10:91506600-91521200	Weak transcription	Fetal Brain Female	brain
49	chr10:91506600-91522400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr10:91506600-91522400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood

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