Variant report

Variant	rs7358171
Chromosome Location	chr10:91540192-91540193
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11185834	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11185847	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11185856	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11185859	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11185860	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11185863	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12243201	1.00[AMR][1000 genomes]
rs12243754	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12245986	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12248074	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12249226	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12250112	1.00[AMR][1000 genomes]
rs12250364	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12253366	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12255116	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12260674	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12261302	0.82[AFR][1000 genomes]
rs12263925	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12264995	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12267178	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12267287	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12267623	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12268389	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59978417	1.00[AMR][1000 genomes]
rs7090381	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7358158	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046241	chr10:91478562-91614437	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv869080	chr10:91498641-91712834	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv1036581	chr10:91526705-91691536	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91461600-91546600	Weak transcription	Small Intestine	intestine
2	chr10:91478400-91542400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr10:91480800-91542200	Weak transcription	Fetal Kidney	kidney
4	chr10:91504200-91544200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr10:91506400-91541200	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr10:91506400-91543800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr10:91506400-91544800	Weak transcription	Ovary	ovary
8	chr10:91506400-91549000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr10:91506600-91540200	Weak transcription	Fetal Intestine Small	intestine
10	chr10:91506600-91540400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr10:91506600-91542000	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr10:91506600-91543600	Weak transcription	Brain Germinal Matrix	brain
13	chr10:91506600-91554200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr10:91521000-91542800	Weak transcription	Stomach Smooth Muscle	stomach
15	chr10:91522000-91541800	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr10:91523000-91540200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr10:91523000-91549400	Weak transcription	Adipose Nuclei	Adipose
18	chr10:91523200-91540200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr10:91523200-91540200	Weak transcription	Fetal Brain Female	brain
20	chr10:91523400-91540200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr10:91523400-91541400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
22	chr10:91523400-91542600	Weak transcription	Osteobl	bone
23	chr10:91523400-91549000	Weak transcription	K562	blood
24	chr10:91523600-91540200	Weak transcription	Lung	lung
25	chr10:91523600-91542000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr10:91523600-91544200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr10:91528600-91542800	Weak transcription	Primary T helper cells PMA-I stimulated	--
28	chr10:91529600-91549000	Weak transcription	Primary T cells fromperipheralblood	blood
29	chr10:91529800-91542600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
30	chr10:91530000-91540200	Weak transcription	Duodenum Mucosa	Duodenum
31	chr10:91530000-91540800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
32	chr10:91530000-91541800	Weak transcription	Primary T helper cells fromperipheralblood	blood
33	chr10:91530000-91542600	Weak transcription	Fetal Lung	lung
34	chr10:91531200-91543000	Weak transcription	NH-A	brain
35	chr10:91531400-91541200	Weak transcription	H9 Cell Line	embryonic stem cell
36	chr10:91531600-91543000	Weak transcription	Fetal Intestine Large	intestine
37	chr10:91532000-91541000	Weak transcription	GM12878-XiMat	blood
38	chr10:91532200-91542600	Weak transcription	HUVEC	blood vessel
39	chr10:91533200-91554400	Weak transcription	NHEK	skin
40	chr10:91533600-91544600	Weak transcription	Muscle Satellite Cultured Cells	--
41	chr10:91533800-91543200	Weak transcription	NHDF-Ad	bronchial
42	chr10:91534800-91540200	Weak transcription	HSMM	muscle
43	chr10:91534800-91542600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr10:91535200-91542200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
45	chr10:91535200-91544000	Weak transcription	HUES64 Cell Line	embryonic stem cell
46	chr10:91536000-91541800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr10:91537000-91544200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
48	chr10:91537600-91540400	Weak transcription	Aorta	Aorta
49	chr10:91537800-91541600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr10:91538400-91545000	Weak transcription	A549	lung

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