Variant report

Variant	rs12264995
Chromosome Location	chr10:91444237-91444238
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:2)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:91437211..91438849-chr10:91444037..91445655,2	K562	blood:
2	chr10:91427349..91430030-chr10:91442278..91445461,3	K562	blood:
3	chr10:91441849..91444725-chr10:91459786..91462291,3	MCF-7	breast:
4	chr10:91427763..91430030-chr10:91442877..91445461,2	K562	blood:
5	chr10:91434484..91437093-chr10:91443083..91444662,2	K562	blood:
6	chr10:91443236..91445812-chr10:91446483..91448919,2	K562	blood:

(count:2 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PANK1-5	chr10:91444032-91444539	NONHSAT015527
2	lnc-PANK1-5	chr10:91441037-91444539	l_346_NR_026835

No data

Variant related genes	Relation type
ENSG00000138182	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11185834	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11185847	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11185856	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11185859	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11185860	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11185863	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs12243201	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12243754	1.00[YRI][hapmap];0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12245986	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12248074	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12249226	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12250112	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12250364	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12253366	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12255116	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12260674	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12263925	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12267178	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12267287	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12267623	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12268389	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59978417	1.00[AMR][1000 genomes]
rs61246394	1.00[AMR][1000 genomes]
rs7090381	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7358158	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7358171	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91443600-91444600	Enhancers	HSMMtube	muscle
2	chr10:91443800-91444600	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr10:91443800-91444600	Enhancers	Pancreas	Pancrea
4	chr10:91443800-91444600	Enhancers	Right Atrium	heart
5	chr10:91443800-91445000	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr10:91444000-91444400	Enhancers	Primary hematopoietic stem cells	blood
7	chr10:91444000-91444600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr10:91444200-91444600	Enhancers	Primary neutrophils fromperipheralblood	blood
9	chr10:91444200-91444600	Enhancers	Skeletal Muscle Male	skeletal muscle
10	chr10:91444200-91444600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
11	chr10:91444200-91444800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr10:91444200-91445200	Enhancers	Fetal Muscle Leg	muscle

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