Variant report

Variant	rs11185834
Chromosome Location	chr10:91422922-91422923
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:91419389..91421103-chr10:91422503..91425309,2	K562	blood:
2	chr10:91403479..91405898-chr10:91422483..91424826,2	MCF-7	breast:
3	chr10:91422377..91425082-chr10:91458847..91461752,3	K562	blood:
4	chr10:91403557..91405807-chr10:91422817..91427702,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000249962	Chromatin interaction
ENSG00000235100	Chromatin interaction
ENSG00000152782	Chromatin interaction
ENSG00000138182	Chromatin interaction
ENSG00000232936	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11185847	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11185856	1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11185859	1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11185860	1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11185863	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs12243201	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12243754	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs12245986	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12248074	1.00[AMR][1000 genomes]
rs12249226	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12250112	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12250364	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12253366	1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12255116	1.00[AMR][1000 genomes]
rs12260674	1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12263925	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12264995	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12267178	1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12267287	1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12267623	1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12268389	1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59978417	1.00[AMR][1000 genomes]
rs61246394	1.00[AMR][1000 genomes]
rs7090381	1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7358158	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7358171	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91419600-91423000	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr10:91419600-91423600	Weak transcription	Fetal Muscle Trunk	muscle
3	chr10:91419600-91423600	Weak transcription	Fetal Muscle Leg	muscle
4	chr10:91422400-91423200	Enhancers	NHDF-Ad	bronchial
5	chr10:91422600-91424400	Enhancers	Fetal Heart	heart
6	chr10:91422600-91425000	Enhancers	Psoas Muscle	Psoas
7	chr10:91422600-91425000	Enhancers	Skeletal Muscle Male	skeletal muscle
8	chr10:91422800-91423000	Enhancers	HSMMtube	muscle
9	chr10:91422800-91423400	Enhancers	Fetal Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links