The 2.0 version of rSNPBase

Variant report

Variant rs6138465
Chromosome Location chr20:24986295-24986296
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:87 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr20:24974000-24986400 Weak transcription Aorta Aorta
2 chr20:24974200-24988200 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
3 chr20:24974400-24992000 Weak transcription GM12878-XiMat blood
4 chr20:24975800-24986400 Weak transcription Primary T helper naive cells from peripheral blood blood
5 chr20:24976000-24986400 Weak transcription Primary hematopoietic stem cells short term culture blood
6 chr20:24976000-24986400 Weak transcription Rectal Mucosa Donor 31 rectum
7 chr20:24976000-24987600 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
8 chr20:24976000-24988000 Weak transcription Primary T killer naive cells fromperipheralblood blood
9 chr20:24976000-24999000 Weak transcription Primary T killer memory cells from peripheral blood blood
10 chr20:24977000-24986600 Weak transcription Fetal Thymus thymus
11 chr20:24979000-24987400 Weak transcription Small Intestine intestine
12 chr20:24981200-24986600 Weak transcription Esophagus oesophagus
13 chr20:24981400-24986600 Weak transcription Brain Inferior Temporal Lobe brain
14 chr20:24981600-24986400 Weak transcription Brain Hippocampus Middle brain
15 chr20:24981600-24986400 Weak transcription Duodenum Smooth Muscle Duodenum
16 chr20:24981600-24987400 Weak transcription Stomach Mucosa stomach
17 chr20:24981600-24989600 Weak transcription Brain Angular Gyrus brain
18 chr20:24981600-25003600 Weak transcription Fetal Heart heart
19 chr20:24981800-24986600 Weak transcription Ovary ovary
20 chr20:24981800-24987000 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
21 chr20:24981800-24987800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
22 chr20:24981800-24988200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
23 chr20:24981800-24989800 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
24 chr20:24981800-24992600 Weak transcription Psoas Muscle Psoas
25 chr20:24981800-24992800 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
26 chr20:24981800-24997200 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
27 chr20:24983200-24990000 Strong transcription Fetal Lung lung
28 chr20:24983200-24996800 Strong transcription Primary B cells from peripheral blood blood
29 chr20:24983200-25003800 Strong transcription Primary T cells fromperipheralblood blood
30 chr20:24983200-25005000 Strong transcription Primary T helper cells fromperipheralblood blood
31 chr20:24983200-25007800 Strong transcription Primary T cells from cord blood blood
32 chr20:24983200-25008200 Strong transcription Primary B cells from cord blood blood
33 chr20:24983400-24995400 Strong transcription Primary Natural Killer cells fromperipheralblood blood
34 chr20:24983400-24996600 Strong transcription Placenta Placenta
35 chr20:24983800-24994800 Strong transcription Primary hematopoietic stem cells blood
36 chr20:24983800-25006800 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
37 chr20:24984400-24989800 Strong transcription Skeletal Muscle Female skeletal muscle
38 chr20:24984600-24997200 Strong transcription Fetal Intestine Large intestine
39 chr20:24984800-24986400 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
40 chr20:24985000-24997200 Strong transcription Fetal Muscle Trunk muscle
41 chr20:24985000-24997600 Strong transcription Fetal Intestine Small intestine
42 chr20:24985000-25004400 Strong transcription Monocytes-CD14+_RO01746 blood
43 chr20:24985000-25005600 Strong transcription Primary T helper naive cells fromperipheralblood blood
44 chr20:24985200-24986400 Enhancers Colon Smooth Muscle Colon
45 chr20:24985200-24986400 Strong transcription Left Ventricle heart
46 chr20:24985200-24995800 Strong transcription Sigmoid Colon Sigmoid Colon
47 chr20:24985200-25002600 Strong transcription Primary T cells effector/memory enriched fromperipheralblood blood
48 chr20:24985200-25003200 Strong transcription Fetal Adrenal Gland Adrenal Gland
49 chr20:24985200-25007800 Strong transcription Fetal Muscle Leg muscle
50 chr20:24985600-24986600 Genic enhancers Breast Myoepithelial Primary Cells Breast

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Last update: Aug 31, 2015