The 2.0 version of rSNPBase

Variant report

Variant rs6138461
Chromosome Location chr20:24980339-24980340
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:78 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr20:24974000-24981000 Weak transcription Psoas Muscle Psoas
2 chr20:24974000-24985800 Weak transcription Primary mononuclear cells fromperipheralblood Blood
3 chr20:24974000-24985800 Weak transcription Thymus Thymus
4 chr20:24974000-24986400 Weak transcription Aorta Aorta
5 chr20:24974200-24985200 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
6 chr20:24974200-24985800 Weak transcription Primary T helper 17 cells PMA-I stimulated --
7 chr20:24974200-24988200 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
8 chr20:24974400-24981000 Weak transcription Sigmoid Colon Sigmoid Colon
9 chr20:24974400-24983200 Weak transcription Primary T cells from cord blood blood
10 chr20:24974400-24992000 Weak transcription GM12878-XiMat blood
11 chr20:24974800-24985800 Weak transcription Spleen Spleen
12 chr20:24975200-24981400 Enhancers Fetal Intestine Large intestine
13 chr20:24975600-24980400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
14 chr20:24975800-24983200 Weak transcription Primary T helper cells fromperipheralblood blood
15 chr20:24975800-24986400 Weak transcription Primary T helper naive cells from peripheral blood blood
16 chr20:24976000-24983200 Weak transcription Primary B cells from cord blood blood
17 chr20:24976000-24983200 Weak transcription Primary hematopoietic stem cells blood
18 chr20:24976000-24983200 Weak transcription Fetal Lung lung
19 chr20:24976000-24983400 Weak transcription Primary Natural Killer cells fromperipheralblood blood
20 chr20:24976000-24985000 Weak transcription Primary T helper naive cells fromperipheralblood blood
21 chr20:24976000-24985000 Weak transcription Monocytes-CD14+_RO01746 blood
22 chr20:24976000-24985800 Weak transcription Primary T regulatory cells fromperipheralblood blood
23 chr20:24976000-24985800 Weak transcription Rectal Mucosa Donor 29 rectum
24 chr20:24976000-24986000 Weak transcription Primary T helper cells PMA-I stimulated --
25 chr20:24976000-24986000 Weak transcription Colonic Mucosa Colon
26 chr20:24976000-24986400 Weak transcription Primary hematopoietic stem cells short term culture blood
27 chr20:24976000-24986400 Weak transcription Rectal Mucosa Donor 31 rectum
28 chr20:24976000-24987600 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
29 chr20:24976000-24988000 Weak transcription Primary T killer naive cells fromperipheralblood blood
30 chr20:24976000-24999000 Weak transcription Primary T killer memory cells from peripheral blood blood
31 chr20:24976200-24980800 Weak transcription Ovary ovary
32 chr20:24976200-24983200 Weak transcription Primary B cells from peripheral blood blood
33 chr20:24976200-24985800 Weak transcription Primary monocytes fromperipheralblood blood
34 chr20:24976200-24985800 Weak transcription Adipose Nuclei Adipose
35 chr20:24976200-24985800 Weak transcription Lung lung
36 chr20:24976200-24986200 Weak transcription Dnd41 blood
37 chr20:24976600-24980800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
38 chr20:24976600-24981600 Enhancers Fetal Intestine Small intestine
39 chr20:24976800-24983200 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
40 chr20:24976800-24983200 Weak transcription Fetal Muscle Trunk muscle
41 chr20:24976800-24986000 Weak transcription Brain Germinal Matrix brain
42 chr20:24977000-24980800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
43 chr20:24977000-24983400 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
44 chr20:24977000-24983400 Weak transcription Fetal Adrenal Gland Adrenal Gland
45 chr20:24977000-24986600 Weak transcription Fetal Thymus thymus
46 chr20:24977200-24983200 Weak transcription Fetal Stomach stomach
47 chr20:24977400-24980600 Weak transcription Brain Substantia Nigra brain
48 chr20:24977400-24980800 Weak transcription Brain Angular Gyrus brain
49 chr20:24977400-24980800 Weak transcription Brain Anterior Caudate brain
50 chr20:24977600-24980800 Weak transcription Duodenum Smooth Muscle Duodenum

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Last update: Aug 31, 2015