The 2.0 version of rSNPBase

Variant report

Variant rs7269416
Chromosome Location chr20:24976196-24976197
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:102 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr20:24974000-24976200 Enhancers Primary B cells from peripheral blood blood
2 chr20:24974000-24976200 Enhancers Primary T cells fromperipheralblood blood
3 chr20:24974000-24976200 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
4 chr20:24974000-24976200 Enhancers Fetal Intestine Small intestine
5 chr20:24974000-24976400 Enhancers Fetal Adrenal Gland Adrenal Gland
6 chr20:24974000-24976400 Enhancers Fetal Thymus thymus
7 chr20:24974000-24976600 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
8 chr20:24974000-24976800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
9 chr20:24974000-24976800 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
10 chr20:24974000-24977000 Enhancers Fetal Muscle Leg muscle
11 chr20:24974000-24977800 Enhancers Placenta Placenta
12 chr20:24974000-24979000 Enhancers Duodenum Mucosa Duodenum
13 chr20:24974000-24981000 Weak transcription Psoas Muscle Psoas
14 chr20:24974000-24985800 Weak transcription Primary mononuclear cells fromperipheralblood Blood
15 chr20:24974000-24985800 Weak transcription Thymus Thymus
16 chr20:24974000-24986400 Weak transcription Aorta Aorta
17 chr20:24974200-24976200 Enhancers Primary monocytes fromperipheralblood blood
18 chr20:24974200-24976200 Enhancers Dnd41 blood
19 chr20:24974200-24976200 Enhancers HMEC breast
20 chr20:24974200-24976600 Weak transcription Right Atrium heart
21 chr20:24974200-24976800 Enhancers H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
22 chr20:24974200-24985200 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
23 chr20:24974200-24985800 Weak transcription Primary T helper 17 cells PMA-I stimulated --
24 chr20:24974200-24988200 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
25 chr20:24974400-24976200 Enhancers Breast Myoepithelial Primary Cells Breast
26 chr20:24974400-24977000 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
27 chr20:24974400-24977600 Enhancers H9 Derived Neuron Cultured Cells ES cell derived
28 chr20:24974400-24977800 Enhancers Placenta Amnion Placenta Amnion
29 chr20:24974400-24978600 Weak transcription Small Intestine intestine
30 chr20:24974400-24981000 Weak transcription Sigmoid Colon Sigmoid Colon
31 chr20:24974400-24983200 Weak transcription Primary T cells from cord blood blood
32 chr20:24974400-24992000 Weak transcription GM12878-XiMat blood
33 chr20:24974600-24976200 Enhancers NHEK skin
34 chr20:24974600-24977200 Enhancers Pancreas Pancrea
35 chr20:24974600-24977200 Enhancers A549 lung
36 chr20:24974800-24976800 Enhancers Foreskin Melanocyte Primary Cells skin01 Skin
37 chr20:24974800-24985800 Weak transcription Spleen Spleen
38 chr20:24975000-24976200 Enhancers Stomach Mucosa stomach
39 chr20:24975000-24977800 Enhancers Left Ventricle heart
40 chr20:24975200-24976200 Enhancers Gastric stomach
41 chr20:24975200-24976200 Flanking Active TSS Skeletal Muscle Male skeletal muscle
42 chr20:24975200-24977200 Enhancers Fetal Stomach stomach
43 chr20:24975200-24978200 Enhancers Right Ventricle heart
44 chr20:24975200-24981400 Enhancers Fetal Intestine Large intestine
45 chr20:24975400-24976200 Flanking Active TSS Brain Cingulate Gyrus brain
46 chr20:24975400-24976200 Flanking Active TSS Duodenum Smooth Muscle Duodenum
47 chr20:24975400-24976200 Flanking Active TSS Rectal Smooth Muscle rectum
48 chr20:24975400-24976200 Flanking Active TSS Stomach Smooth Muscle stomach
49 chr20:24975400-24976400 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
50 chr20:24975400-24977000 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin

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Last update: Aug 31, 2015