The 2.0 version of rSNPBase

Variant report

Variant rs735886
Chromosome Location chr20:24933843-24933844
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:79 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr20:24928600-24940400 Weak transcription Right Atrium heart
2 chr20:24929600-24936400 Weak transcription Fetal Intestine Small intestine
3 chr20:24930000-24934800 Weak transcription GM12878-XiMat blood
4 chr20:24930000-24936400 Weak transcription Sigmoid Colon Sigmoid Colon
5 chr20:24930200-24936800 Enhancers Primary monocytes fromperipheralblood blood
6 chr20:24930200-24939400 Weak transcription Right Ventricle heart
7 chr20:24930400-24934200 Weak transcription Pancreas Pancrea
8 chr20:24930400-24934400 Weak transcription Lung lung
9 chr20:24930400-24935000 Weak transcription Primary T helper naive cells fromperipheralblood blood
10 chr20:24930400-24939000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
11 chr20:24930600-24935600 Weak transcription Primary T cells from cord blood blood
12 chr20:24930600-24943000 Weak transcription Rectal Mucosa Donor 31 rectum
13 chr20:24930800-24934400 Weak transcription Dnd41 blood
14 chr20:24930800-24935000 Weak transcription Thymus Thymus
15 chr20:24930800-24938200 Weak transcription Colonic Mucosa Colon
16 chr20:24931000-24938000 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
17 chr20:24931200-24935000 Transcr. at gene 5' and 3' Primary Natural Killer cells fromperipheralblood blood
18 chr20:24931200-24936400 Weak transcription Esophagus oesophagus
19 chr20:24931200-24936400 Weak transcription Rectal Mucosa Donor 29 rectum
20 chr20:24931400-24934000 Enhancers Primary hematopoietic stem cells short term culture blood
21 chr20:24931400-24939600 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
22 chr20:24931600-24934400 Weak transcription Gastric stomach
23 chr20:24931600-24938000 Weak transcription NHLF lung
24 chr20:24931600-24938600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
25 chr20:24931800-24934400 Weak transcription Primary T helper 17 cells PMA-I stimulated --
26 chr20:24931800-24934600 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
27 chr20:24931800-24936400 Weak transcription Muscle Satellite Cultured Cells --
28 chr20:24932000-24934600 Enhancers Adipose Nuclei Adipose
29 chr20:24932000-24943000 Weak transcription HSMM muscle
30 chr20:24932000-24943400 Weak transcription HSMMtube muscle
31 chr20:24932200-24934600 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
32 chr20:24932200-24941000 Weak transcription A549 lung
33 chr20:24932400-24936000 Enhancers Primary T helper memory cells from peripheral blood 2 blood
34 chr20:24932400-24936000 Enhancers Monocytes-CD14+_RO01746 blood
35 chr20:24932600-24934600 Enhancers Liver Liver
36 chr20:24932600-24934800 Transcr. at gene 5' and 3' Primary T cells fromperipheralblood blood
37 chr20:24932600-24938000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
38 chr20:24932600-24938200 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
39 chr20:24932600-24939200 Weak transcription iPS-15b Cell Line embryonic stem cell
40 chr20:24933000-24934000 Weak transcription Primary T helper cells fromperipheralblood blood
41 chr20:24933000-24935000 Strong transcription H1 Derived Mesenchymal Stem Cells ES cell derived
42 chr20:24933000-24935600 Weak transcription Primary hematopoietic stem cells blood
43 chr20:24933000-24936600 Weak transcription Brain Anterior Caudate brain
44 chr20:24933000-24937600 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
45 chr20:24933200-24934000 Enhancers Duodenum Mucosa Duodenum
46 chr20:24933200-24934200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
47 chr20:24933200-24936400 Weak transcription Breast Myoepithelial Primary Cells Breast
48 chr20:24933200-24936400 Weak transcription Brain Germinal Matrix brain
49 chr20:24933200-24937000 Weak transcription Fetal Brain Female brain
50 chr20:24933200-24940400 Weak transcription Colon Smooth Muscle Colon

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Last update: Aug 31, 2015