The 2.0 version of rSNPBase

Variant report

Variant rs58244398
Chromosome Location chr20:24977989-24977990
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:73 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr20:24974000-24979000 Enhancers Duodenum Mucosa Duodenum
2 chr20:24974000-24981000 Weak transcription Psoas Muscle Psoas
3 chr20:24974000-24985800 Weak transcription Primary mononuclear cells fromperipheralblood Blood
4 chr20:24974000-24985800 Weak transcription Thymus Thymus
5 chr20:24974000-24986400 Weak transcription Aorta Aorta
6 chr20:24974200-24985200 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
7 chr20:24974200-24985800 Weak transcription Primary T helper 17 cells PMA-I stimulated --
8 chr20:24974200-24988200 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
9 chr20:24974400-24978600 Weak transcription Small Intestine intestine
10 chr20:24974400-24981000 Weak transcription Sigmoid Colon Sigmoid Colon
11 chr20:24974400-24983200 Weak transcription Primary T cells from cord blood blood
12 chr20:24974400-24992000 Weak transcription GM12878-XiMat blood
13 chr20:24974800-24985800 Weak transcription Spleen Spleen
14 chr20:24975200-24978200 Enhancers Right Ventricle heart
15 chr20:24975200-24981400 Enhancers Fetal Intestine Large intestine
16 chr20:24975400-24978200 Enhancers Fetal Heart heart
17 chr20:24975600-24980400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
18 chr20:24975800-24983200 Weak transcription Primary T helper cells fromperipheralblood blood
19 chr20:24975800-24986400 Weak transcription Primary T helper naive cells from peripheral blood blood
20 chr20:24976000-24978000 Enhancers Cortex derived primary cultured neurospheres brain
21 chr20:24976000-24983200 Weak transcription Primary B cells from cord blood blood
22 chr20:24976000-24983200 Weak transcription Primary hematopoietic stem cells blood
23 chr20:24976000-24983200 Weak transcription Fetal Lung lung
24 chr20:24976000-24983400 Weak transcription Primary Natural Killer cells fromperipheralblood blood
25 chr20:24976000-24985000 Weak transcription Primary T helper naive cells fromperipheralblood blood
26 chr20:24976000-24985000 Weak transcription Monocytes-CD14+_RO01746 blood
27 chr20:24976000-24985800 Weak transcription Primary T regulatory cells fromperipheralblood blood
28 chr20:24976000-24985800 Weak transcription Rectal Mucosa Donor 29 rectum
29 chr20:24976000-24986000 Weak transcription Primary T helper cells PMA-I stimulated --
30 chr20:24976000-24986000 Weak transcription Colonic Mucosa Colon
31 chr20:24976000-24986400 Weak transcription Primary hematopoietic stem cells short term culture blood
32 chr20:24976000-24986400 Weak transcription Rectal Mucosa Donor 31 rectum
33 chr20:24976000-24987600 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
34 chr20:24976000-24988000 Weak transcription Primary T killer naive cells fromperipheralblood blood
35 chr20:24976000-24999000 Weak transcription Primary T killer memory cells from peripheral blood blood
36 chr20:24976200-24978000 Enhancers Skeletal Muscle Male skeletal muscle
37 chr20:24976200-24978000 Enhancers Skeletal Muscle Female skeletal muscle
38 chr20:24976200-24979000 Weak transcription Gastric stomach
39 chr20:24976200-24979200 Weak transcription Stomach Mucosa stomach
40 chr20:24976200-24980800 Weak transcription Ovary ovary
41 chr20:24976200-24983200 Weak transcription Primary B cells from peripheral blood blood
42 chr20:24976200-24985800 Weak transcription Primary monocytes fromperipheralblood blood
43 chr20:24976200-24985800 Weak transcription Adipose Nuclei Adipose
44 chr20:24976200-24985800 Weak transcription Lung lung
45 chr20:24976200-24986200 Weak transcription Dnd41 blood
46 chr20:24976600-24978000 Enhancers Right Atrium heart
47 chr20:24976600-24978200 Enhancers Esophagus oesophagus
48 chr20:24976600-24980800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
49 chr20:24976600-24981600 Enhancers Fetal Intestine Small intestine
50 chr20:24976800-24983200 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain

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Last update: Aug 31, 2015