Variant report
Variant | rs227621 |
---|---|
Chromosome Location | chr20:24910528-24910529 |
allele | A/C |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:2 , 50 per page) page:
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No data |
No data |
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Variant related genes | Relation type |
---|---|
ENSG00000101474 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs1056033 | 0.93[ASN][1000 genomes] |
rs1056036 | 0.90[ASN][1000 genomes] |
rs11700073 | 0.86[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs11905625 | 0.86[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs11906373 | 0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs12625319 | 0.91[ASN][1000 genomes] |
rs13041643 | 0.93[ASN][1000 genomes] |
rs1331286 | 0.88[ASN][1000 genomes] |
rs1535042 | 0.93[ASN][1000 genomes] |
rs1854849 | 0.88[ASN][1000 genomes] |
rs1977540 | 0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs2008275 | 0.88[ASN][1000 genomes] |
rs2092565 | 0.93[ASN][1000 genomes] |
rs2103736 | 0.93[ASN][1000 genomes] |
rs2151462 | 1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs2151463 | 1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs2179729 | 0.93[ASN][1000 genomes] |
rs2179730 | 0.90[ASN][1000 genomes] |
rs2206891 | 0.84[ASN][1000 genomes] |
rs2225459 | 0.93[ASN][1000 genomes] |
rs2235847 | 0.88[ASN][1000 genomes] |
rs227590 | 0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs227597 | 0.87[AMR][1000 genomes];0.88[ASN][1000 genomes] |
rs227598 | 0.85[ASN][1000 genomes] |
rs227608 | 0.81[AMR][1000 genomes] |
rs227609 | 0.87[AMR][1000 genomes];0.83[ASN][1000 genomes] |
rs227612 | 0.87[AMR][1000 genomes] |
rs227613 | 0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs227614 | 0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs227615 | 0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs227616 | 0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs227618 | 0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs227619 | 0.97[ASN][1000 genomes] |
rs227620 | 0.97[ASN][1000 genomes] |
rs227622 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs227623 | 0.97[ASN][1000 genomes] |
rs227624 | 1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs227625 | 1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs227626 | 0.97[ASN][1000 genomes] |
rs227627 | 1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs227628 | 0.97[ASN][1000 genomes] |
rs227629 | 0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs227630 | 0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs227631 | 1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs227632 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs227633 | 0.97[ASN][1000 genomes] |
rs227634 | 0.97[ASN][1000 genomes] |
rs227635 | 0.97[ASN][1000 genomes] |
rs227639 | 0.97[ASN][1000 genomes] |
rs227643 | 0.97[ASN][1000 genomes] |
rs227646 | 0.97[ASN][1000 genomes] |
rs227648 | 0.97[ASN][1000 genomes] |
rs227649 | 0.88[ASN][1000 genomes] |
rs227650 | 0.97[ASN][1000 genomes] |
rs227651 | 0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs227652 | 0.97[ASN][1000 genomes] |
rs227653 | 0.97[ASN][1000 genomes] |
rs227657 | 0.97[ASN][1000 genomes] |
rs227658 | 0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs227659 | 0.97[ASN][1000 genomes] |
rs2387365 | 0.88[ASN][1000 genomes] |
rs2387366 | 0.93[ASN][1000 genomes] |
rs2387572 | 0.93[ASN][1000 genomes] |
rs2424691 | 1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs2892279 | 0.90[ASN][1000 genomes] |
rs34419834 | 0.93[ASN][1000 genomes] |
rs3746330 | 0.81[ASN][1000 genomes] |
rs4273288 | 0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs4462848 | 0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs4527284 | 0.87[ASN][1000 genomes] |
rs4539860 | 0.93[ASN][1000 genomes] |
rs45468392 | 0.97[ASN][1000 genomes] |
rs45556041 | 0.97[ASN][1000 genomes] |
rs4594518 | 0.84[ASN][1000 genomes] |
rs4813541 | 0.93[ASN][1000 genomes] |
rs4813542 | 0.93[ASN][1000 genomes] |
rs4815325 | 0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs4815327 | 0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs4815337 | 0.93[ASN][1000 genomes] |
rs4815339 | 0.91[ASN][1000 genomes] |
rs4815340 | 0.93[ASN][1000 genomes] |
rs4815341 | 0.90[ASN][1000 genomes] |
rs4815351 | 0.89[ASN][1000 genomes] |
rs4815355 | 0.93[ASN][1000 genomes] |
rs4815357 | 0.88[ASN][1000 genomes] |
rs56312312 | 0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs57265446 | 0.90[ASN][1000 genomes] |
rs58244398 | 0.93[ASN][1000 genomes] |
rs6036976 | 0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs6050131 | 0.83[ASN][1000 genomes] |
rs6050134 | 0.88[ASN][1000 genomes] |
rs6050177 | 0.90[ASN][1000 genomes] |
rs6050179 | 0.90[ASN][1000 genomes] |
rs6050181 | 0.90[ASN][1000 genomes] |
rs6050201 | 0.90[ASN][1000 genomes] |
rs6083684 | 0.93[ASN][1000 genomes] |
rs6083685 | 0.93[ASN][1000 genomes] |
rs6083686 | 0.93[ASN][1000 genomes] |
rs6083688 | 0.93[ASN][1000 genomes] |
rs6083692 | 0.91[ASN][1000 genomes] |
rs6083699 | 0.93[ASN][1000 genomes] |
rs6083709 | 0.88[ASN][1000 genomes] |
rs6106975 | 0.90[ASN][1000 genomes] |
rs6106984 | 0.86[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs6114980 | 0.86[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs6114981 | 0.86[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs6114984 | 0.86[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs6114988 | 0.86[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs6132773 | 0.93[ASN][1000 genomes] |
rs6132774 | 0.93[ASN][1000 genomes] |
rs6132775 | 0.97[ASN][1000 genomes] |
rs6132777 | 0.97[ASN][1000 genomes] |
rs6132778 | 0.97[ASN][1000 genomes] |
rs6132783 | 0.86[ASN][1000 genomes] |
rs6132785 | 0.81[ASN][1000 genomes] |
rs6138406 | 0.84[ASN][1000 genomes] |
rs6138407 | 0.82[AFR][1000 genomes];0.80[EUR][1000 genomes] |
rs6138408 | 0.80[AMR][1000 genomes];0.80[EUR][1000 genomes] |
rs6138409 | 0.86[AFR][1000 genomes];0.86[AMR][1000 genomes] |
rs6138417 | 0.93[ASN][1000 genomes] |
rs6138423 | 0.93[ASN][1000 genomes] |
rs6138431 | 0.87[ASN][1000 genomes] |
rs6138435 | 0.93[ASN][1000 genomes] |
rs6138437 | 0.93[ASN][1000 genomes] |
rs6138438 | 0.97[ASN][1000 genomes] |
rs6138442 | 0.93[ASN][1000 genomes] |
rs6138453 | 0.88[ASN][1000 genomes] |
rs6138455 | 0.93[ASN][1000 genomes] |
rs6138456 | 0.93[ASN][1000 genomes] |
rs6138457 | 0.93[ASN][1000 genomes] |
rs6138458 | 0.86[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs6138460 | 0.86[ASN][1000 genomes] |
rs6138461 | 0.82[ASN][1000 genomes] |
rs6138463 | 0.81[ASN][1000 genomes] |
rs6138466 | 0.81[ASN][1000 genomes] |
rs62215110 | 0.97[ASN][1000 genomes] |
rs62215115 | 0.97[ASN][1000 genomes] |
rs62215128 | 0.93[ASN][1000 genomes] |
rs62215131 | 0.93[ASN][1000 genomes] |
rs6707 | 0.89[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs7268095 | 0.86[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs7269416 | 0.86[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs735886 | 0.93[ASN][1000 genomes] |
rs8125909 | 0.93[ASN][1000 genomes] |
rs8183891 | 0.88[ASN][1000 genomes] |
rs914314 | 0.88[ASN][1000 genomes] |
rs926661 | 0.90[ASN][1000 genomes] |
rs926662 | 0.93[ASN][1000 genomes] |
rs9753592 | 0.82[AFR][1000 genomes];0.81[AMR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1062140 | chr20:24807962-25304054 | Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 49 gene(s) | inside rSNPs | diseases |
2 | nsv544219 | chr20:24807962-25304054 | Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Active TSS Enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 49 gene(s) | inside rSNPs | diseases |
3 | nsv1056345 | chr20:24819570-25168159 | Flanking Active TSS Bivalent Enhancer Enhancers Strong transcription Flanking Bivalent TSS/Enh Weak transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 34 gene(s) | inside rSNPs | diseases |
4 | nsv1055341 | chr20:24848416-25302271 | Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 49 gene(s) | inside rSNPs | diseases |
5 | nsv432115 | chr20:24871385-24915839 | Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats | Chromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
6 | nsv1058559 | chr20:24880415-24923818 | Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS | Chromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
7 | nsv1061536 | chr20:24880777-24930642 | Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
8 | nsv1060158 | chr20:24887819-24918081 | Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS | Chromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
9 | nsv1066090 | chr20:24887819-24923818 | Weak transcription Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats | Chromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
10 | nsv1065568 | chr20:24887819-24925706 | Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
11 | nsv510783 | chr20:24889192-24941933 | Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
12 | nsv524921 | chr20:24897355-24932028 | Bivalent/Poised TSS Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
13 | nsv964444 | chr20:24899460-24934649 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
14 | esv2752899 | chr20:24899800-24923800 | Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh | Chromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
15 | esv2762068 | chr20:24908860-24974986 | Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr20:24901400-24915200 | Weak transcription | H1 Derived Mesenchymal Stem Cells | ES cell derived |
2 | chr20:24907600-24911000 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
3 | chr20:24908600-24911400 | Enhancers | Placenta | Placenta |
4 | chr20:24908600-24912400 | Enhancers | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
5 | chr20:24908800-24911200 | Weak transcription | HSMMtube | muscle |
6 | chr20:24909400-24911400 | Enhancers | Foreskin Melanocyte Primary Cells skin01 | Skin |
7 | chr20:24909400-24912000 | Weak transcription | Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells | embryonic stem cell |
8 | chr20:24909600-24910600 | Weak transcription | Breast Myoepithelial Primary Cells | Breast |
9 | chr20:24909600-24913400 | Enhancers | Foreskin Melanocyte Primary Cells skin03 | Skin |
10 | chr20:24910400-24910800 | Enhancers | Foreskin Keratinocyte Primary Cells skin02 | Skin |
11 | chr20:24910400-24911000 | Enhancers | Primary neutrophils fromperipheralblood | blood |
12 | chr20:24910400-24911000 | Enhancers | Foreskin Keratinocyte Primary Cells skin03 | Skin |
13 | chr20:24910400-24911000 | Enhancers | HMEC | breast |
14 | chr20:24910400-24911000 | Enhancers | NHEK | skin |
15 | chr20:24910400-24911200 | Enhancers | Pancreas | Pancrea |
16 | chr20:24910400-24911200 | Enhancers | Placenta Amnion | Placenta Amnion |
17 | chr20:24910400-24913200 | Enhancers | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |