Variant report

Variant	rs2235847
Chromosome Location	chr20:24973897-24973898
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GABPA	chr20:24972846-24973932	SK-N-SH	brain:	n/a	n/a
2	POLR2A	chr20:24972720-24973997	H1-hESC	embryonic stem cell:	n/a	n/a
3	JUND	chr20:24973245-24973940	HepG2	liver:	n/a	chr20:24973827-24973837
4	POLR2A	chr20:24972956-24973912	K562	blood:	n/a	n/a
5	E2F4	chr20:24972905-24974465	MCF10A-Er-Src	breast:	n/a	chr20:24973329-24973339 chr20:24973368-24973378
6	MYC	chr20:24973214-24973965	MCF10A-Er-Src	breast:	n/a	n/a
7	CREB1	chr20:24972935-24973955	GM12878	blood:	n/a	n/a
8	CTCF	chr20:24972584-24976092	A549	lung:	n/a	n/a
9	MAX	chr20:24972577-24974081	HepG2	liver:	n/a	n/a
10	POLR2A	chr20:24972948-24973943	MCF10A-Er-Src	breast:	n/a	n/a
11	POLR2A	chr20:24972713-24974126	GM18505	blood:	n/a	n/a
12	ELK1	chr20:24973173-24973921	Hela-S3	cervix:	n/a	n/a
13	RAD21	chr20:24972827-24974927	SK-N-SH	brain:	n/a	chr20:24973647-24973661
14	TEAD4	chr20:24973270-24973937	HepG2	liver:	n/a	n/a
15	TBP	chr20:24973175-24973943	GM12878	blood:	n/a	n/a
16	GABPA	chr20:24973016-24974093	A549	lung:	n/a	n/a
17	POLR2A	chr20:24972504-24973906	HepG2	liver:	n/a	n/a
18	MAX	chr20:24972564-24973914	SK-N-SH	brain:	n/a	n/a
19	MAX	chr20:24972561-24973914	K562	blood:	n/a	n/a
20	POLR2A	chr20:24972757-24973945	HUVEC	blood vessel:	n/a	n/a
21	POLR2A	chr20:24972948-24973952	MCF-7	breast:	n/a	n/a
22	POLR2A	chr20:24970881-24974631	IMR90	lung:	n/a	n/a
23	HA-E2F1	chr20:24973026-24973964	MCF-7	breast:	n/a	chr20:24973329-24973339 chr20:24973469-24973480 chr20:24973368-24973378
24	POLR2A	chr20:24972671-24973932	K562	blood:	n/a	n/a
25	POLR2A	chr20:24973006-24973940	Hela-S3	cervix:	n/a	n/a
26	POLR2A	chr20:24972739-24974856	GM12878	blood:	n/a	n/a
27	JUND	chr20:24972971-24973942	K562	blood:	n/a	chr20:24973827-24973837
28	BCL3	chr20:24973091-24974085	A549	lung:	n/a	chr20:24973526-24973535
29	GABPA	chr20:24972451-24974850	MCF-7	breast:	n/a	n/a
30	MAX	chr20:24972544-24973921	HepG2	liver:	n/a	n/a
31	FOXA1	chr20:24973078-24973918	HepG2	liver:	n/a	n/a
32	MAX	chr20:24973355-24973946	H1-hESC	embryonic stem cell:	n/a	n/a
33	POLR2A	chr20:24972654-24973962	GM19193	blood:	n/a	n/a
34	SP1	chr20:24973070-24973942	A549	lung:	n/a	chr20:24973449-24973463 chr20:24973448-24973459 chr20:24973468-24973479 chr20:24973449-24973458 chr20:24973449-24973458 chr20:24973448-24973460 chr20:24973450-24973459
35	SIN3AK20	chr20:24972816-24973976	MCF-7	breast:	n/a	n/a
36	GABPA	chr20:24972952-24973964	MCF-7	breast:	n/a	n/a
37	POLR2A	chr20:24972994-24973912	HUVEC	blood vessel:	n/a	n/a
38	MAX	chr20:24972734-24973929	H1-hESC	embryonic stem cell:	n/a	n/a
39	TAF1	chr20:24972914-24973993	MCF-7	breast:	n/a	n/a
40	MYC	chr20:24972752-24973909	NB4	blood:	n/a	n/a
41	MYC	chr20:24972746-24973989	K562	blood:	n/a	n/a
42	E2F6	chr20:24972760-24973985	A549	lung:	n/a	chr20:24973329-24973339 chr20:24973470-24973481 chr20:24973368-24973378
43	POLR2A	chr20:24972757-24973977	HepG2	liver:	n/a	n/a
44	POLR2A	chr20:24972530-24973902	HL-60	blood:	n/a	n/a
45	POLR2A	chr20:24973021-24973911	HL-60	blood:	n/a	n/a
46	SP1	chr20:24972960-24973992	A549	lung:	n/a	chr20:24973449-24973463 chr20:24973448-24973459 chr20:24973468-24973479 chr20:24973449-24973458 chr20:24973449-24973458 chr20:24973448-24973460 chr20:24973450-24973459
47	MXI1	chr20:24972368-24973974	IMR90	lung:	n/a	n/a
48	ELF1	chr20:24972906-24973996	HCT-116	colon:	n/a	chr20:24973524-24973535 chr20:24973525-24973534
49	POLR2A	chr20:24972643-24973989	Hela-S3	cervix:	n/a	n/a
50	FOXA1	chr20:24973174-24973904	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr20:24972188..24974753-chr20:24992355..24994002,2	K562	blood:
2	chr20:24970831..24976063-chr20:25037253..25040567,5	MCF-7	breast:
3	chr20:24972013..24974485-chr20:25388171..25390084,2	MCF-7	breast:
4	chr20:24973762..24975336-chr20:25378149..25379762,2	MCF-7	breast:
5	chr20:24971936..24974944-chr20:25175039..25178381,3	MCF-7	breast:
6	chr20:24972575..24975462-chr20:25603621..25605250,2	K562	blood:
7	chr20:24972059..24974449-chr20:25176101..25177683,2	MCF-7	breast:
8	chr20:24973677..24976371-chr20:25035249..25037062,2	MCF-7	breast:
9	chr20:24971839..24974533-chr20:25228512..25230139,2	MCF-7	breast:
10	chr20:24972184..24974531-chr20:25057258..25059368,3	MCF-7	breast:

Variant related genes	Relation type
APMAP	TF binding region
ENSG00000100994	Chromatin interaction
ENSG00000197586	Chromatin interaction
ENSG00000213742	Chromatin interaction
ENSG00000101003	Chromatin interaction
ENSG00000154930	Chromatin interaction
ENSG00000100987	Chromatin interaction
ENSG00000170191	Chromatin interaction

Extended variants
information (count: 140 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:134)

rs_ID	r²[population]
rs1056033	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1056036	1.00[CHB][hapmap];0.94[CHD][hapmap];0.86[JPT][hapmap];0.86[MEX][hapmap];0.93[ASN][1000 genomes]
rs11087486	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11699285	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11700073	0.85[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs11905625	0.85[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs11906373	0.88[ASN][1000 genomes]
rs12625319	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13041643	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1535042	0.85[CHB][hapmap];0.86[JPT][hapmap];0.91[ASN][1000 genomes]
rs2008275	1.00[ASW][hapmap];0.89[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.95[GIH][hapmap];0.86[JPT][hapmap];0.97[LWK][hapmap];0.86[MEX][hapmap];0.85[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2092565	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2103736	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2151462	0.88[ASN][1000 genomes]
rs2151463	0.88[ASN][1000 genomes]
rs2179729	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2179730	0.93[ASN][1000 genomes]
rs2179732	0.86[JPT][hapmap]
rs2206891	0.87[ASN][1000 genomes]
rs2225459	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs227613	0.84[ASN][1000 genomes]
rs227614	0.86[ASN][1000 genomes]
rs227615	0.82[ASN][1000 genomes]
rs227616	0.88[ASN][1000 genomes]
rs227618	0.81[ASN][1000 genomes]
rs227619	0.86[ASN][1000 genomes]
rs227620	0.86[ASN][1000 genomes]
rs227621	0.88[ASN][1000 genomes]
rs227622	0.88[ASN][1000 genomes]
rs227623	0.86[ASN][1000 genomes]
rs227624	0.88[ASN][1000 genomes]
rs227625	0.85[CHB][hapmap];0.86[JPT][hapmap];0.88[ASN][1000 genomes]
rs227626	0.86[ASN][1000 genomes]
rs227627	0.86[ASN][1000 genomes]
rs227628	0.86[ASN][1000 genomes]
rs227629	0.88[ASN][1000 genomes]
rs227630	0.88[ASN][1000 genomes]
rs227631	0.88[ASN][1000 genomes]
rs227632	0.88[ASN][1000 genomes]
rs227633	0.85[CHB][hapmap];0.94[CHD][hapmap];0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs227634	0.85[CHB][hapmap];0.94[CHD][hapmap];0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs227635	0.86[ASN][1000 genomes]
rs227639	0.86[ASN][1000 genomes]
rs227643	0.86[ASN][1000 genomes]
rs227646	0.86[ASN][1000 genomes]
rs227648	0.86[ASN][1000 genomes]
rs227650	0.82[CHB][hapmap];0.84[JPT][hapmap];0.86[ASN][1000 genomes]
rs227651	0.88[ASN][1000 genomes]
rs227652	0.86[ASN][1000 genomes]
rs227653	0.85[CHB][hapmap];0.94[CHD][hapmap];0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs227657	0.86[ASN][1000 genomes]
rs227658	0.88[ASN][1000 genomes]
rs227659	0.86[ASN][1000 genomes]
rs2387366	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2387572	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2424691	0.88[ASN][1000 genomes]
rs2892279	0.93[ASN][1000 genomes]
rs34419834	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3746330	0.94[CHD][hapmap];0.86[JPT][hapmap]
rs4527284	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4539860	0.81[ASN][1000 genomes]
rs45468392	0.86[ASN][1000 genomes]
rs45556041	0.86[ASN][1000 genomes]
rs4594518	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4813541	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4813542	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4815337	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4815339	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4815340	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4815341	0.93[ASN][1000 genomes]
rs4815351	0.96[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4815355	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4815357	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56312312	0.93[ASN][1000 genomes]
rs57265446	0.88[ASN][1000 genomes]
rs58244398	0.91[ASN][1000 genomes]
rs6050177	0.93[ASN][1000 genomes]
rs6050179	0.93[ASN][1000 genomes]
rs6050181	0.93[ASN][1000 genomes]
rs6050198	1.00[CHB][hapmap]
rs6050201	1.00[CHB][hapmap];0.93[CHD][hapmap];0.86[JPT][hapmap];0.81[MEX][hapmap];0.93[ASN][1000 genomes]
rs6050249	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs6083684	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6083685	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6083686	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6083688	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6083692	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6083699	0.96[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6083709	0.96[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6106975	0.93[ASN][1000 genomes]
rs6106984	0.93[ASN][1000 genomes]
rs6114980	0.85[CHB][hapmap];0.94[CHD][hapmap];0.86[JPT][hapmap];0.93[ASN][1000 genomes]
rs6114981	0.85[CHB][hapmap];0.94[CHD][hapmap];0.86[JPT][hapmap];0.93[ASN][1000 genomes]
rs6114984	0.85[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs6114988	0.93[ASN][1000 genomes]
rs6114992	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6132773	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6132774	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6132775	0.85[CHB][hapmap];0.94[CHD][hapmap];0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs6132777	0.85[CHB][hapmap];0.94[CHD][hapmap];0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs6132778	0.85[CHB][hapmap];0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs6132783	0.84[ASN][1000 genomes]
rs6132784	0.94[CHD][hapmap];0.86[JPT][hapmap]
rs6138406	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6138417	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6138423	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6138425	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6138426	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6138427	0.83[EUR][1000 genomes]
rs6138431	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6138435	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6138437	0.96[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6138438	0.86[ASN][1000 genomes]
rs6138442	0.85[CHB][hapmap];0.86[JPT][hapmap];0.91[ASN][1000 genomes]
rs6138453	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6138455	0.85[CHB][hapmap];0.86[JPT][hapmap];0.91[ASN][1000 genomes]
rs6138456	0.91[ASN][1000 genomes]
rs6138457	0.85[CHB][hapmap];0.86[JPT][hapmap];0.91[ASN][1000 genomes]
rs6138458	0.85[CHB][hapmap];0.94[CHD][hapmap];0.86[JPT][hapmap];0.93[ASN][1000 genomes]
rs6138460	0.84[ASN][1000 genomes]
rs6138461	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6138466	0.94[CHD][hapmap];0.86[JPT][hapmap]
rs62215110	0.86[ASN][1000 genomes]
rs62215115	0.86[ASN][1000 genomes]
rs62215128	0.91[ASN][1000 genomes]
rs62215131	0.91[ASN][1000 genomes]
rs6707	0.85[CHB][hapmap];0.94[CHD][hapmap];0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs7268095	0.85[CHB][hapmap];0.94[CHD][hapmap];0.86[JPT][hapmap];0.93[ASN][1000 genomes]
rs7269416	0.93[ASN][1000 genomes]
rs735886	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8125909	0.85[CHB][hapmap];0.94[CHD][hapmap];0.86[JPT][hapmap];0.91[ASN][1000 genomes]
rs8183891	0.96[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs926661	0.93[ASN][1000 genomes]
rs926662	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062140	chr20:24807962-25304054	Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv544219	chr20:24807962-25304054	Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Active TSS Enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	nsv1056345	chr20:24819570-25168159	Flanking Active TSS Bivalent Enhancer Enhancers Strong transcription Flanking Bivalent TSS/Enh Weak transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
4	nsv1055341	chr20:24848416-25302271	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
5	esv2762068	chr20:24908860-24974986	Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
6	nsv585745	chr20:24932028-25007089	Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs2235847	NKX2-4	cis	cerebellum	SCAN
rs2235847	C20orf3	cis	parietal	SCAN

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24971000-24974200	Active TSS	Right Atrium	heart
2	chr20:24971800-24974000	Active TSS	H1 Cell Line	embryonic stem cell
3	chr20:24972000-24974000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
4	chr20:24972000-24974400	Active TSS	Pancreatic Islets	Pancreatic Islet
5	chr20:24972200-24974000	Active TSS	H9 Cell Line	embryonic stem cell
6	chr20:24972200-24974000	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr20:24972200-24974000	Active TSS	NHDF-Ad	bronchial
8	chr20:24972400-24974000	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr20:24972400-24974000	Active TSS	HUES6 Cell Line	embryonic stem cell
10	chr20:24972400-24974000	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr20:24972400-24974000	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr20:24972400-24974000	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr20:24972400-24974000	Active TSS	Brain Anterior Caudate	brain
14	chr20:24972400-24974000	Active TSS	Psoas Muscle	Psoas
15	chr20:24972400-24974200	Active TSS	ES-I3 Cell Line	embryonic stem cell
16	chr20:24972400-24974200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr20:24972400-24974200	Active TSS	Breast Myoepithelial Primary Cells	Breast
18	chr20:24972600-24974000	Active TSS	iPS-15b Cell Line	embryonic stem cell
19	chr20:24972600-24974000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr20:24972600-24974000	Active TSS	Primary T helper cells PMA-I stimulated	--
21	chr20:24972600-24974000	Active TSS	Aorta	Aorta
22	chr20:24972600-24974000	Active TSS	Brain Substantia Nigra	brain
23	chr20:24972600-24974000	Active TSS	Colon Smooth Muscle	Colon
24	chr20:24972600-24974000	Active TSS	Fetal Brain Male	brain
25	chr20:24972600-24974000	Active TSS	Fetal Intestine Large	intestine
26	chr20:24972600-24974000	Active TSS	Fetal Kidney	kidney
27	chr20:24972600-24974000	Active TSS	Fetal Lung	lung
28	chr20:24972600-24974000	Active TSS	Ovary	ovary
29	chr20:24972600-24974000	Active TSS	Small Intestine	intestine
30	chr20:24972600-24974000	Active TSS	Stomach Mucosa	stomach
31	chr20:24972600-24974000	Active TSS	HSMMtube	muscle
32	chr20:24972600-24974200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr20:24972600-24974200	Active TSS	Brain Inferior Temporal Lobe	brain
34	chr20:24972600-24974200	Active TSS	Duodenum Smooth Muscle	Duodenum
35	chr20:24972600-24974400	Active TSS	Brain Angular Gyrus	brain
36	chr20:24972800-24974000	Active TSS	Primary T killer memory cells from peripheral blood	blood
37	chr20:24972800-24974000	Active TSS	Brain Cingulate Gyrus	brain
38	chr20:24972800-24974000	Active TSS	Brain Hippocampus Middle	brain
39	chr20:24972800-24974000	Active TSS	Esophagus	oesophagus
40	chr20:24972800-24974000	Active TSS	Left Ventricle	heart
41	chr20:24972800-24974000	Active TSS	Pancreas	Pancrea
42	chr20:24972800-24974000	Active TSS	Right Ventricle	heart
43	chr20:24972800-24974000	Active TSS	Thymus	Thymus
44	chr20:24972800-24974400	Active TSS	Sigmoid Colon	Sigmoid Colon
45	chr20:24972800-24974600	Active TSS	Fetal Brain Female	brain
46	chr20:24973000-24974000	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr20:24973200-24974000	Active TSS	Fetal Muscle Trunk	muscle
48	chr20:24973400-24974000	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
49	chr20:24973600-24974000	Flanking Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr20:24973600-24974000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood

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