The 2.0 version of rSNPBase

Variant report

Variant rs227659
Chromosome Location chr20:24932441-24932442
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:59 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr20:24928600-24940400 Weak transcription Right Atrium heart
2 chr20:24929400-24932600 Flanking Active TSS Primary T cells fromperipheralblood blood
3 chr20:24929400-24933800 Active TSS Primary B cells from cord blood blood
4 chr20:24929600-24936400 Weak transcription Fetal Intestine Small intestine
5 chr20:24930000-24933200 Active TSS Primary T killer memory cells from peripheral blood blood
6 chr20:24930000-24934800 Weak transcription GM12878-XiMat blood
7 chr20:24930000-24936400 Weak transcription Sigmoid Colon Sigmoid Colon
8 chr20:24930200-24936800 Enhancers Primary monocytes fromperipheralblood blood
9 chr20:24930200-24939400 Weak transcription Right Ventricle heart
10 chr20:24930400-24933600 Active TSS Primary T helper naive cells from peripheral blood blood
11 chr20:24930400-24934200 Weak transcription Pancreas Pancrea
12 chr20:24930400-24934400 Weak transcription Lung lung
13 chr20:24930400-24935000 Weak transcription Primary T helper naive cells fromperipheralblood blood
14 chr20:24930400-24939000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
15 chr20:24930600-24932600 Weak transcription Liver Liver
16 chr20:24930600-24933000 Enhancers Primary hematopoietic stem cells blood
17 chr20:24930600-24935600 Weak transcription Primary T cells from cord blood blood
18 chr20:24930600-24943000 Weak transcription Rectal Mucosa Donor 31 rectum
19 chr20:24930800-24933400 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
20 chr20:24930800-24933600 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
21 chr20:24930800-24933800 Enhancers Placenta Placenta
22 chr20:24930800-24934400 Weak transcription Dnd41 blood
23 chr20:24930800-24935000 Weak transcription Thymus Thymus
24 chr20:24930800-24938200 Weak transcription Colonic Mucosa Colon
25 chr20:24931000-24933600 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
26 chr20:24931000-24933600 Bivalent Enhancer Fetal Muscle Trunk muscle
27 chr20:24931000-24933800 Flanking Active TSS Primary neutrophils fromperipheralblood blood
28 chr20:24931000-24938000 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
29 chr20:24931200-24933000 Weak transcription Fetal Thymus thymus
30 chr20:24931200-24935000 Transcr. at gene 5' and 3' Primary Natural Killer cells fromperipheralblood blood
31 chr20:24931200-24936400 Weak transcription Esophagus oesophagus
32 chr20:24931200-24936400 Weak transcription Rectal Mucosa Donor 29 rectum
33 chr20:24931400-24933000 Enhancers Primary T helper cells fromperipheralblood blood
34 chr20:24931400-24934000 Enhancers Primary hematopoietic stem cells short term culture blood
35 chr20:24931400-24939600 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
36 chr20:24931600-24933200 Weak transcription Duodenum Mucosa Duodenum
37 chr20:24931600-24933800 Enhancers Fetal Muscle Leg muscle
38 chr20:24931600-24934400 Weak transcription Gastric stomach
39 chr20:24931600-24938000 Weak transcription NHLF lung
40 chr20:24931600-24938600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
41 chr20:24931800-24933000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
42 chr20:24931800-24934400 Weak transcription Primary T helper 17 cells PMA-I stimulated --
43 chr20:24931800-24934600 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
44 chr20:24931800-24936400 Weak transcription Muscle Satellite Cultured Cells --
45 chr20:24932000-24933000 Weak transcription Spleen Spleen
46 chr20:24932000-24933800 Weak transcription Primary T regulatory cells fromperipheralblood blood
47 chr20:24932000-24934600 Enhancers Adipose Nuclei Adipose
48 chr20:24932000-24943000 Weak transcription HSMM muscle
49 chr20:24932000-24943400 Weak transcription HSMMtube muscle
50 chr20:24932200-24932600 Enhancers H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived

Quick Search:


  
Input of quick search could be:

what's new

Quick links

Copyright © 2015, Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences. All Rights Reserved Feedback
Last update: Aug 31, 2015