The 2.0 version of rSNPBase

Variant report

Variant rs45556041
Chromosome Location chr20:24939764-24939765
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:118 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr20:24928600-24940400 Weak transcription Right Atrium heart
2 chr20:24930600-24943000 Weak transcription Rectal Mucosa Donor 31 rectum
3 chr20:24932000-24943000 Weak transcription HSMM muscle
4 chr20:24932000-24943400 Weak transcription HSMMtube muscle
5 chr20:24932200-24941000 Weak transcription A549 lung
6 chr20:24933200-24940400 Weak transcription Colon Smooth Muscle Colon
7 chr20:24933800-24941600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
8 chr20:24933800-24943800 Weak transcription NHEK skin
9 chr20:24934600-24943200 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
10 chr20:24935000-24943000 Weak transcription ES-I3 Cell Line embryonic stem cell
11 chr20:24935000-24943800 Weak transcription Rectal Smooth Muscle rectum
12 chr20:24935000-24953600 Genic enhancers Primary Natural Killer cells fromperipheralblood blood
13 chr20:24935200-24943200 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
14 chr20:24935200-24957600 Strong transcription Liver Liver
15 chr20:24935200-24971800 Weak transcription K562 blood
16 chr20:24935400-24940200 Weak transcription HUES48 Cell Line embryonic stem cell
17 chr20:24935400-24943000 Weak transcription iPS-18 Cell Line embryonic stem cell
18 chr20:24935600-24940200 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
19 chr20:24935800-24941200 Weak transcription Small Intestine intestine
20 chr20:24935800-24942600 Weak transcription Osteobl bone
21 chr20:24935800-24945200 Strong transcription Skeletal Muscle Male skeletal muscle
22 chr20:24936000-24939800 Weak transcription Primary B cells from cord blood blood
23 chr20:24936000-24941000 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
24 chr20:24936000-24942000 Weak transcription Primary T helper naive cells fromperipheralblood blood
25 chr20:24936000-24955600 Strong transcription Primary T regulatory cells fromperipheralblood blood
26 chr20:24936200-24939800 Weak transcription Primary B cells from peripheral blood blood
27 chr20:24936200-24940600 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
28 chr20:24936200-24941400 Strong transcription Brain Angular Gyrus brain
29 chr20:24936200-24947400 Genic enhancers Primary T cells fromperipheralblood blood
30 chr20:24936200-24954400 Strong transcription Foreskin Fibroblast Primary Cells skin01 Skin
31 chr20:24936400-24940000 Strong transcription Brain Cingulate Gyrus brain
32 chr20:24936400-24941600 Strong transcription Esophagus oesophagus
33 chr20:24936400-24943000 Strong transcription Fetal Muscle Trunk muscle
34 chr20:24936400-24947000 Strong transcription Sigmoid Colon Sigmoid Colon
35 chr20:24936400-24954400 Strong transcription Fetal Intestine Small intestine
36 chr20:24936400-24954400 Strong transcription Fetal Stomach stomach
37 chr20:24936400-24954600 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
38 chr20:24936400-24954600 Strong transcription Brain Germinal Matrix brain
39 chr20:24936400-24954600 Strong transcription Fetal Adrenal Gland Adrenal Gland
40 chr20:24936400-24954800 Strong transcription Spleen Spleen
41 chr20:24936400-24956000 Strong transcription Breast Myoepithelial Primary Cells Breast
42 chr20:24936600-24940000 Strong transcription Skeletal Muscle Female skeletal muscle
43 chr20:24936600-24940800 Strong transcription Pancreas Pancrea
44 chr20:24936600-24941400 Weak transcription H9 Cell Line embryonic stem cell
45 chr20:24936600-24941800 Strong transcription Rectal Mucosa Donor 29 rectum
46 chr20:24936600-24942400 Weak transcription GM12878-XiMat blood
47 chr20:24936600-24943400 Weak transcription Fetal Lung lung
48 chr20:24936600-24944200 Strong transcription Fetal Muscle Leg muscle
49 chr20:24936600-24944400 Weak transcription Primary hematopoietic stem cells blood
50 chr20:24936600-24945800 Strong transcription Brain Hippocampus Middle brain

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Last update: Aug 31, 2015