Variant report

Variant	rs227613
Chromosome Location	chr20:24908076-24908077
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 156 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:141)

rs_ID	r²[population]
rs1056033	0.88[ASN][1000 genomes]
rs1056036	0.86[ASN][1000 genomes]
rs11700073	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11905625	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11906373	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12625319	0.86[ASN][1000 genomes]
rs13041643	0.88[ASN][1000 genomes]
rs1331286	0.83[ASN][1000 genomes]
rs1535042	0.87[ASN][1000 genomes]
rs1854849	0.83[ASN][1000 genomes]
rs1977540	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2008275	0.84[ASN][1000 genomes]
rs2092565	0.88[ASN][1000 genomes]
rs2103736	0.88[ASN][1000 genomes]
rs2151462	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2151463	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2179729	0.88[ASN][1000 genomes]
rs2179730	0.86[ASN][1000 genomes]
rs2225459	0.88[ASN][1000 genomes]
rs2235847	0.84[ASN][1000 genomes]
rs227590	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs227597	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs227598	0.90[ASN][1000 genomes]
rs227608	0.83[AMR][1000 genomes]
rs227609	0.89[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs227612	0.89[AMR][1000 genomes]
rs227614	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs227615	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs227616	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs227618	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs227619	0.92[ASN][1000 genomes]
rs227620	0.92[ASN][1000 genomes]
rs227621	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs227622	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs227623	0.92[ASN][1000 genomes]
rs227624	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs227625	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs227626	0.92[ASN][1000 genomes]
rs227627	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs227628	0.92[ASN][1000 genomes]
rs227629	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs227630	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs227631	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs227632	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs227633	0.92[ASN][1000 genomes]
rs227634	0.92[ASN][1000 genomes]
rs227635	0.92[ASN][1000 genomes]
rs227639	0.92[ASN][1000 genomes]
rs227643	0.92[ASN][1000 genomes]
rs227646	0.92[ASN][1000 genomes]
rs227648	0.92[ASN][1000 genomes]
rs227649	0.82[ASN][1000 genomes]
rs227650	0.92[ASN][1000 genomes]
rs227651	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs227652	0.92[ASN][1000 genomes]
rs227653	0.92[ASN][1000 genomes]
rs227657	0.92[ASN][1000 genomes]
rs227658	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs227659	0.92[ASN][1000 genomes]
rs2387362	0.81[AMR][1000 genomes]
rs2387365	0.83[ASN][1000 genomes]
rs2387366	0.88[ASN][1000 genomes]
rs2387572	0.88[ASN][1000 genomes]
rs2424691	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2892279	0.86[ASN][1000 genomes]
rs34419834	0.88[ASN][1000 genomes]
rs4273288	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4462848	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4527284	0.82[ASN][1000 genomes]
rs4539860	0.87[ASN][1000 genomes]
rs45468392	0.92[ASN][1000 genomes]
rs45556041	0.92[ASN][1000 genomes]
rs4813541	0.88[ASN][1000 genomes]
rs4813542	0.88[ASN][1000 genomes]
rs4815325	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4815327	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4815337	0.88[ASN][1000 genomes]
rs4815339	0.86[ASN][1000 genomes]
rs4815340	0.88[ASN][1000 genomes]
rs4815341	0.86[ASN][1000 genomes]
rs4815351	0.84[ASN][1000 genomes]
rs4815355	0.88[ASN][1000 genomes]
rs4815357	0.84[ASN][1000 genomes]
rs56312312	0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs57265446	0.85[ASN][1000 genomes]
rs58244398	0.87[ASN][1000 genomes]
rs6036976	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6050134	0.83[ASN][1000 genomes]
rs6050177	0.86[ASN][1000 genomes]
rs6050179	0.86[ASN][1000 genomes]
rs6050181	0.86[ASN][1000 genomes]
rs6050201	0.86[ASN][1000 genomes]
rs6083684	0.88[ASN][1000 genomes]
rs6083685	0.88[ASN][1000 genomes]
rs6083686	0.88[ASN][1000 genomes]
rs6083688	0.88[ASN][1000 genomes]
rs6083692	0.86[ASN][1000 genomes]
rs6083699	0.88[ASN][1000 genomes]
rs6083709	0.84[ASN][1000 genomes]
rs6106975	0.86[ASN][1000 genomes]
rs6106984	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6114980	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6114981	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6114984	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6114988	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6132773	0.88[ASN][1000 genomes]
rs6132774	0.88[ASN][1000 genomes]
rs6132775	0.92[ASN][1000 genomes]
rs6132777	0.92[ASN][1000 genomes]
rs6132778	0.92[ASN][1000 genomes]
rs6132783	0.81[ASN][1000 genomes]
rs6138407	0.80[AMR][1000 genomes]
rs6138408	0.81[AMR][1000 genomes]
rs6138409	0.88[AMR][1000 genomes]
rs6138417	0.88[ASN][1000 genomes]
rs6138423	0.88[ASN][1000 genomes]
rs6138431	0.82[ASN][1000 genomes]
rs6138435	0.88[ASN][1000 genomes]
rs6138437	0.88[ASN][1000 genomes]
rs6138438	0.92[ASN][1000 genomes]
rs6138442	0.87[ASN][1000 genomes]
rs6138453	0.84[ASN][1000 genomes]
rs6138455	0.87[ASN][1000 genomes]
rs6138456	0.87[ASN][1000 genomes]
rs6138457	0.87[ASN][1000 genomes]
rs6138458	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6138460	0.81[ASN][1000 genomes]
rs62215110	0.92[ASN][1000 genomes]
rs62215115	0.92[ASN][1000 genomes]
rs62215128	0.87[ASN][1000 genomes]
rs62215131	0.87[ASN][1000 genomes]
rs6707	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7268095	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7269416	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs735886	0.88[ASN][1000 genomes]
rs8125909	0.87[ASN][1000 genomes]
rs8183891	0.84[ASN][1000 genomes]
rs914314	0.83[ASN][1000 genomes]
rs926661	0.86[ASN][1000 genomes]
rs926662	0.88[ASN][1000 genomes]
rs9753592	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062140	chr20:24807962-25304054	Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv544219	chr20:24807962-25304054	Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Active TSS Enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	nsv1056345	chr20:24819570-25168159	Flanking Active TSS Bivalent Enhancer Enhancers Strong transcription Flanking Bivalent TSS/Enh Weak transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
4	nsv1055341	chr20:24848416-25302271	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
5	nsv432115	chr20:24871385-24915839	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv1058559	chr20:24880415-24923818	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv1061536	chr20:24880777-24930642	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv1060158	chr20:24887819-24918081	Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv1066090	chr20:24887819-24923818	Weak transcription Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	nsv1065568	chr20:24887819-24925706	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
11	nsv510783	chr20:24889192-24941933	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
12	nsv524921	chr20:24897355-24932028	Bivalent/Poised TSS Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
13	nsv964444	chr20:24899460-24934649	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
14	esv2752899	chr20:24899800-24923800	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
15	esv1006547	chr20:24900616-24909178	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24901400-24915200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr20:24907600-24911000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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