The 2.0 version of rSNPBase

Variant report

Variant rs227629
Chromosome Location chr20:24913551-24913552
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:29 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr20:24901400-24915200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
2 chr20:24911000-24914600 Enhancers Primary T cells fromperipheralblood blood
3 chr20:24911000-24914600 Enhancers Primary hematopoietic stem cells short term culture blood
4 chr20:24911000-24914600 Enhancers Primary Natural Killer cells fromperipheralblood blood
5 chr20:24911000-24915200 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
6 chr20:24911200-24913600 Enhancers Primary T helper naive cells from peripheral blood blood
7 chr20:24911200-24914000 Weak transcription Fetal Intestine Small intestine
8 chr20:24911400-24913800 Enhancers Primary T helper memory cells from peripheral blood 2 blood
9 chr20:24911400-24915800 Enhancers Thymus Thymus
10 chr20:24911800-24913800 Enhancers Primary T helper cells PMA-I stimulated --
11 chr20:24911800-24913800 Enhancers Primary T helper cells fromperipheralblood blood
12 chr20:24911800-24913800 Weak transcription Fetal Intestine Large intestine
13 chr20:24911800-24914200 Enhancers Foreskin Melanocyte Primary Cells skin01 Skin
14 chr20:24911800-24914600 Enhancers Placenta Placenta
15 chr20:24912000-24914200 Enhancers Primary T helper 17 cells PMA-I stimulated --
16 chr20:24912000-24914600 Enhancers Dnd41 blood
17 chr20:24912200-24914000 Weak transcription Gastric stomach
18 chr20:24912200-24914400 Enhancers Primary hematopoietic stem cells blood
19 chr20:24912200-24915000 Weak transcription Esophagus oesophagus
20 chr20:24912400-24913600 Weak transcription Colonic Mucosa Colon
21 chr20:24912400-24913800 Enhancers Primary T killer memory cells from peripheral blood blood
22 chr20:24912600-24913600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
23 chr20:24912600-24914000 Weak transcription Duodenum Mucosa Duodenum
24 chr20:24913000-24914000 Weak transcription Primary T helper naive cells fromperipheralblood blood
25 chr20:24913000-24914000 Weak transcription Fetal Thymus thymus
26 chr20:24913000-24914000 Weak transcription HSMMtube muscle
27 chr20:24913200-24915400 Enhancers Pancreas Pancrea
28 chr20:24913200-24916400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
29 chr20:24913400-24915400 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --

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Last update: Aug 31, 2015