Variant report

Variant	rs6083709
Chromosome Location	chr20:24975483-24975484
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:95)
CpG islands
(count:0)
Chromatin interactive
region (count:14)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:95 , 50 per page) page: 1 2

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr20:24975454-24976031	SK-N-SH	brain:	n/a	chr20:24975816-24975826 chr20:24975815-24975824
2	RAD21	chr20:24975473-24975851	K562	blood:	n/a	n/a
3	NFIC	chr20:24975389-24976052	ECC-1	luminal epithelium:	n/a	n/a
4	CHD2	chr20:24975442-24975689	HepG2	liver:	n/a	n/a
5	ARID3A	chr20:24975461-24975859	HepG2	liver:	n/a	n/a
6	MYC	chr20:24975369-24975854	MCF10A-Er-Src	breast:	n/a	chr20:24975816-24975826 chr20:24975815-24975824
7	RAD21	chr20:24975086-24976342	SK-N-SH	brain:	n/a	n/a
8	CTCF	chr20:24972584-24976092	A549	lung:	n/a	n/a
9	RAD21	chr20:24975438-24975907	H1-hESC	embryonic stem cell:	n/a	n/a
10	CTCF	chr20:24975372-24975892	HepG2	liver:	n/a	n/a
11	RAD21	chr20:24975419-24975882	SK-N-SH_RA	brain:	n/a	n/a
12	RAD21	chr20:24975286-24976047	A549	lung:	n/a	n/a
13	ZNF143	chr20:24975450-24975833	GM12878	blood:	n/a	n/a
14	RAD21	chr20:24975284-24975889	GM12878	blood:	n/a	n/a
15	RAD21	chr20:24975210-24975950	HepG2	liver:	n/a	n/a
16	STAT5A	chr20:24975394-24975885	GM12878	blood:	n/a	n/a
17	SMC3	chr20:24975016-24976049	GM12878	blood:	n/a	n/a
18	CTCF	chr20:24975437-24975880	H1-hESC	embryonic stem cell:	n/a	n/a
19	SMC3	chr20:24975451-24976016	Hela-S3	cervix:	n/a	n/a
20	CTCF	chr20:24975261-24976036	HCT-116	colon:	n/a	n/a
21	RCOR1	chr20:24975408-24975984	HepG2	liver:	n/a	n/a
22	CTCF	chr20:24975449-24975741	A549	lung:	n/a	n/a
23	SMC3	chr20:24975383-24975858	K562	blood:	n/a	n/a
24	RAD21	chr20:24975434-24975985	SK-N-SH_RA	brain:	n/a	n/a
25	MAX	chr20:24975404-24976060	MCF-7	breast:	n/a	chr20:24975816-24975826 chr20:24975815-24975824
26	SMC3	chr20:24975192-24976021	HepG2	liver:	n/a	n/a
27	FOXM1	chr20:24975382-24975875	GM12878	blood:	n/a	n/a
28	RAD21	chr20:24975053-24975918	Hela-S3	cervix:	n/a	n/a
29	CTCF	chr20:24975398-24976050	GM12878	blood:	n/a	n/a
30	CTCF	chr20:24975423-24975845	HepG2	liver:	n/a	n/a
31	YY1	chr20:24975476-24975842	GM12878	blood:	n/a	n/a
32	SMC3	chr20:24975183-24977397	SK-N-SH	brain:	n/a	chr20:24976860-24976870 chr20:24976860-24976874 chr20:24976863-24976871
33	RAD21	chr20:24975259-24976099	HCT-116	colon:	n/a	n/a
34	CTCF	chr20:24975399-24975850	H1-hESC	embryonic stem cell:	n/a	n/a
35	TCF12	chr20:24975295-24976069	A549	lung:	n/a	n/a
36	RAD21	chr20:24975168-24976085	MCF-7	breast:	n/a	n/a
37	MXI1	chr20:24975193-24975804	GM12878	blood:	n/a	n/a
38	RAD21	chr20:24975384-24975963	HepG2	liver:	n/a	n/a
39	PBX3	chr20:24975409-24975953	SK-N-SH	brain:	n/a	n/a
40	MAZ	chr20:24975341-24976071	IMR90	lung:	n/a	chr20:24975816-24975826 chr20:24975815-24975824
41	POLR2A	chr20:24975435-24975855	IMR90	lung:	n/a	n/a
42	RUNX3	chr20:24975438-24975881	GM12878	blood:	n/a	n/a
43	RAD21	chr20:24975175-24976044	ECC-1	luminal epithelium:	n/a	n/a
44	CTCF	chr20:24975459-24975826	Spleen_OC	spleen:	n/a	n/a
45	CTCF	chr20:24975479-24975805	MCF-7	breast:	n/a	n/a
46	CTCF	chr20:24975314-24976108	MCF-7	breast:	n/a	n/a
47	ZNF143	chr20:24975470-24975807	K562	blood:	n/a	n/a
48	CTCF	chr20:24975430-24975880	T-47D	breast:	n/a	n/a
49	CTCF	chr20:24975413-24975869	T-47D	breast:	n/a	n/a
50	YY1	chr20:24975448-24975810	GM12892	blood:	n/a	n/a

No data

(count:14 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr20:24970831..24976063-chr20:25037253..25040567,5	MCF-7	breast:
2	chr20:24974463..24977428-chr20:25038810..25041777,2	MCF-7	breast:
3	chr20:24975144..24976098-chr20:25159512..25160449,4	MCF-7	breast:
4	chr20:24975265..24976080-chr20:25274818..25275665,2	MCF-7	breast:
5	chr20:24975304..24980368-chr20:25042845..25047055,6	MCF-7	breast:
6	chr20:24974984..24975902-chr20:25119798..25120321,2	MCF-7	breast:
7	chr20:24975235..24975890-chr20:25277245..25277858,2	MCF-7	breast:
8	chr20:24975245..24975855-chr20:25057445..25058085,2	MCF-7	breast:
9	chr20:24974184..24976552-chr20:25044724..25047326,32	MCF-7	breast:
10	chr20:24973677..24976371-chr20:25035249..25037062,2	MCF-7	breast:
11	chr20:24974985..24976149-chr20:25046073..25047055,8	K562	blood:
12	chr20:24974373..24975913-chr20:24978993..24980704,2	MCF-7	breast:
13	chr20:24975151..24976233-chr20:25045881..25047015,16	MCF-7	breast:
14	chr20:24974829..24976836-chr20:24997683..25000384,2	MCF-7	breast:

No data

Variant related genes	Relation type
APMAP	TF binding region
ENSG00000154930	Chromatin interaction

Extended variants
information (count: 147 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:142)

rs_ID	r²[population]
rs1007881	0.86[JPT][hapmap]
rs1056033	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1056036	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs11087486	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11699285	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11700073	0.85[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs11905625	0.85[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs11906373	0.88[ASN][1000 genomes]
rs12625319	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13041643	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1535042	0.85[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs2008275	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2092565	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2103736	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2151462	0.88[ASN][1000 genomes]
rs2151463	0.88[ASN][1000 genomes]
rs2179729	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2179730	0.93[ASN][1000 genomes]
rs2179732	1.00[JPT][hapmap]
rs2206891	0.87[ASN][1000 genomes]
rs2225459	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2235847	0.96[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs227613	0.84[ASN][1000 genomes]
rs227614	0.86[ASN][1000 genomes]
rs227615	0.82[ASN][1000 genomes]
rs227616	0.88[ASN][1000 genomes]
rs227618	0.81[ASN][1000 genomes]
rs227619	0.86[ASN][1000 genomes]
rs227620	0.86[ASN][1000 genomes]
rs227621	0.88[ASN][1000 genomes]
rs227622	0.88[ASN][1000 genomes]
rs227623	0.86[ASN][1000 genomes]
rs227624	0.88[ASN][1000 genomes]
rs227625	0.85[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs227626	0.86[ASN][1000 genomes]
rs227627	0.86[ASN][1000 genomes]
rs227628	0.86[ASN][1000 genomes]
rs227629	0.88[ASN][1000 genomes]
rs227630	0.88[ASN][1000 genomes]
rs227631	0.88[ASN][1000 genomes]
rs227632	0.88[ASN][1000 genomes]
rs227633	0.85[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs227634	0.85[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs227635	0.86[ASN][1000 genomes]
rs227639	0.86[ASN][1000 genomes]
rs227643	0.86[ASN][1000 genomes]
rs227646	0.86[ASN][1000 genomes]
rs227648	0.86[ASN][1000 genomes]
rs227650	0.82[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs227651	0.88[ASN][1000 genomes]
rs227652	0.86[ASN][1000 genomes]
rs227653	0.85[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs227657	0.86[ASN][1000 genomes]
rs227658	0.88[ASN][1000 genomes]
rs227659	0.86[ASN][1000 genomes]
rs2387366	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2387572	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2424691	0.88[ASN][1000 genomes]
rs2892279	0.93[ASN][1000 genomes]
rs34419834	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3746330	1.00[JPT][hapmap]
rs4527284	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4539860	0.81[ASN][1000 genomes]
rs45468392	0.86[ASN][1000 genomes]
rs45556041	0.86[ASN][1000 genomes]
rs4594518	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4813541	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4813542	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4815337	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4815339	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4815340	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4815341	0.93[ASN][1000 genomes]
rs4815351	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4815355	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4815357	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56312312	0.93[ASN][1000 genomes]
rs57265446	0.88[ASN][1000 genomes]
rs58244398	0.91[ASN][1000 genomes]
rs6050177	0.93[ASN][1000 genomes]
rs6050179	0.93[ASN][1000 genomes]
rs6050181	0.93[ASN][1000 genomes]
rs6050198	1.00[CHB][hapmap]
rs6050201	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs6050249	1.00[JPT][hapmap]
rs6050255	0.86[JPT][hapmap]
rs6050259	0.86[JPT][hapmap]
rs6050261	0.86[JPT][hapmap]
rs6083684	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6083685	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6083686	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6083688	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6083692	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6083699	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6106975	0.93[ASN][1000 genomes]
rs6106984	0.93[ASN][1000 genomes]
rs6114980	0.85[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs6114981	0.85[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs6114984	0.85[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs6114988	0.93[ASN][1000 genomes]
rs6114992	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6132773	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6132774	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6132775	0.85[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs6132777	0.85[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs6132778	0.85[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs6132783	0.84[ASN][1000 genomes]
rs6132784	1.00[JPT][hapmap]
rs6132789	0.86[JPT][hapmap]
rs6138406	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6138417	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6138423	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6138425	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6138426	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6138427	0.82[EUR][1000 genomes]
rs6138431	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6138435	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6138437	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6138438	0.86[ASN][1000 genomes]
rs6138442	0.85[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs6138453	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6138455	0.85[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs6138456	0.91[ASN][1000 genomes]
rs6138457	0.85[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs6138458	0.85[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs6138460	0.84[ASN][1000 genomes]
rs6138461	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6138466	1.00[JPT][hapmap]
rs6138473	0.86[JPT][hapmap]
rs6138474	0.86[JPT][hapmap]
rs6138475	0.86[JPT][hapmap]
rs62215110	0.86[ASN][1000 genomes]
rs62215115	0.86[ASN][1000 genomes]
rs62215128	0.91[ASN][1000 genomes]
rs62215131	0.91[ASN][1000 genomes]
rs6707	0.85[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs7268095	0.85[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs7269416	0.93[ASN][1000 genomes]
rs735886	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8125909	0.85[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs8183891	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs926661	0.93[ASN][1000 genomes]
rs926662	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062140	chr20:24807962-25304054	Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv544219	chr20:24807962-25304054	Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Active TSS Enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	nsv1056345	chr20:24819570-25168159	Flanking Active TSS Bivalent Enhancer Enhancers Strong transcription Flanking Bivalent TSS/Enh Weak transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
4	nsv1055341	chr20:24848416-25302271	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
5	nsv585745	chr20:24932028-25007089	Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24973800-24975800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr20:24973800-24975800	Weak transcription	Lung	lung
3	chr20:24974000-24975600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr20:24974000-24975600	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr20:24974000-24975600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr20:24974000-24975600	Weak transcription	Fetal Muscle Trunk	muscle
7	chr20:24974000-24975800	Enhancers	Primary neutrophils fromperipheralblood	blood
8	chr20:24974000-24975800	Enhancers	Primary T helper naive cells from peripheral blood	blood
9	chr20:24974000-24975800	Weak transcription	HSMMtube	muscle
10	chr20:24974000-24976000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
11	chr20:24974000-24976000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
12	chr20:24974000-24976200	Enhancers	Primary B cells from peripheral blood	blood
13	chr20:24974000-24976200	Enhancers	Primary T cells fromperipheralblood	blood
14	chr20:24974000-24976200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr20:24974000-24976200	Enhancers	Fetal Intestine Small	intestine
16	chr20:24974000-24976400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
17	chr20:24974000-24976400	Enhancers	Fetal Thymus	thymus
18	chr20:24974000-24976600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr20:24974000-24976800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr20:24974000-24976800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr20:24974000-24977000	Enhancers	Fetal Muscle Leg	muscle
22	chr20:24974000-24977800	Enhancers	Placenta	Placenta
23	chr20:24974000-24979000	Enhancers	Duodenum Mucosa	Duodenum
24	chr20:24974000-24981000	Weak transcription	Psoas Muscle	Psoas
25	chr20:24974000-24985800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
26	chr20:24974000-24985800	Weak transcription	Thymus	Thymus
27	chr20:24974000-24986400	Weak transcription	Aorta	Aorta
28	chr20:24974200-24975600	Weak transcription	Primary hematopoietic stem cells	blood
29	chr20:24974200-24975600	Enhancers	Brain Anterior Caudate	brain
30	chr20:24974200-24975600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
31	chr20:24974200-24975600	Enhancers	Brain Substantia Nigra	brain
32	chr20:24974200-24975600	Enhancers	Colon Smooth Muscle	Colon
33	chr20:24974200-24975600	Enhancers	Skeletal Muscle Female	skeletal muscle
34	chr20:24974200-24975600	Enhancers	Osteobl	bone
35	chr20:24974200-24975800	Enhancers	Primary T helper cells fromperipheralblood	blood
36	chr20:24974200-24976000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
37	chr20:24974200-24976000	Enhancers	Rectal Mucosa Donor 31	rectum
38	chr20:24974200-24976000	Enhancers	Monocytes-CD14+_RO01746	blood
39	chr20:24974200-24976200	Enhancers	Primary monocytes fromperipheralblood	blood
40	chr20:24974200-24976200	Enhancers	Dnd41	blood
41	chr20:24974200-24976200	Enhancers	HMEC	breast
42	chr20:24974200-24976600	Weak transcription	Right Atrium	heart
43	chr20:24974200-24976800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr20:24974200-24985200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
45	chr20:24974200-24985800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
46	chr20:24974200-24988200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
47	chr20:24974400-24975600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr20:24974400-24975600	Weak transcription	Primary B cells from cord blood	blood
49	chr20:24974400-24975600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr20:24974400-24975600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links