The 2.0 version of rSNPBase

Variant report

Variant rs227624
Chromosome Location chr20:24911562-24911563
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:54 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr20:24901400-24915200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
2 chr20:24908600-24912400 Enhancers H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
3 chr20:24909400-24912000 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
4 chr20:24909600-24913400 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
5 chr20:24910400-24913200 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
6 chr20:24910600-24911600 Enhancers iPS-15b Cell Line embryonic stem cell
7 chr20:24910600-24911800 Enhancers HUES48 Cell Line embryonic stem cell
8 chr20:24910600-24911800 Bivalent Enhancer Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
9 chr20:24910600-24911800 Enhancers Fetal Intestine Large intestine
10 chr20:24910600-24912200 Enhancers ES-UCSF4 Cell Line embryonic stem cell
11 chr20:24910600-24913000 Enhancers Fetal Thymus thymus
12 chr20:24910800-24911800 Flanking Active TSS Foreskin Keratinocyte Primary Cells skin02 Skin
13 chr20:24910800-24912000 Active TSS Rectal Mucosa Donor 29 rectum
14 chr20:24910800-24912400 Enhancers Adipose Nuclei Adipose
15 chr20:24911000-24911600 Enhancers H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
16 chr20:24911000-24911600 Enhancers Primary hematopoietic stem cells blood
17 chr20:24911000-24911600 Flanking Active TSS Liver Liver
18 chr20:24911000-24911800 Active TSS Rectal Smooth Muscle rectum
19 chr20:24911000-24911800 Flanking Active TSS HMEC breast
20 chr20:24911000-24911800 Flanking Active TSS NHEK skin
21 chr20:24911000-24912000 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
22 chr20:24911000-24912000 Active TSS Stomach Mucosa stomach
23 chr20:24911000-24912200 Enhancers H1 Cell Line embryonic stem cell
24 chr20:24911000-24912200 Enhancers HUES64 Cell Line embryonic stem cell
25 chr20:24911000-24913400 Flanking Active TSS Primary neutrophils fromperipheralblood blood
26 chr20:24911000-24914600 Enhancers Primary T cells fromperipheralblood blood
27 chr20:24911000-24914600 Enhancers Primary hematopoietic stem cells short term culture blood
28 chr20:24911000-24914600 Enhancers Primary Natural Killer cells fromperipheralblood blood
29 chr20:24911000-24915200 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
30 chr20:24911200-24911600 Flanking Active TSS HUES6 Cell Line embryonic stem cell
31 chr20:24911200-24911600 Flanking Active TSS iPS-18 Cell Line embryonic stem cell
32 chr20:24911200-24911600 Flanking Active TSS Breast Myoepithelial Primary Cells Breast
33 chr20:24911200-24911600 Active TSS Colonic Mucosa Colon
34 chr20:24911200-24911600 Active TSS Duodenum Smooth Muscle Duodenum
35 chr20:24911200-24911600 Active TSS Esophagus oesophagus
36 chr20:24911200-24911800 Active TSS Pancreatic Islets Pancreatic Islet
37 chr20:24911200-24911800 Active TSS Fetal Stomach stomach
38 chr20:24911200-24912000 Active TSS Pancreas Pancrea
39 chr20:24911200-24912000 Active TSS Rectal Mucosa Donor 31 rectum
40 chr20:24911200-24912200 Enhancers H9 Cell Line embryonic stem cell
41 chr20:24911200-24912200 Active TSS Primary B cells from cord blood blood
42 chr20:24911200-24912200 Active TSS Gastric stomach
43 chr20:24911200-24913000 Enhancers HSMMtube muscle
44 chr20:24911200-24913600 Enhancers Primary T helper naive cells from peripheral blood blood
45 chr20:24911200-24914000 Weak transcription Fetal Intestine Small intestine
46 chr20:24911400-24911600 Flanking Active TSS Foreskin Keratinocyte Primary Cells skin03 Skin
47 chr20:24911400-24911800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
48 chr20:24911400-24911800 Flanking Active TSS Duodenum Mucosa Duodenum
49 chr20:24911400-24911800 Flanking Active TSS Placenta Placenta
50 chr20:24911400-24912000 Enhancers Primary T killer memory cells from peripheral blood blood

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Last update: Aug 31, 2015