The 2.0 version of rSNPBase

Variant report

Variant rs6114988
Chromosome Location chr20:24977586-24977587
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:78 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr20:24974000-24977800 Enhancers Placenta Placenta
2 chr20:24974000-24979000 Enhancers Duodenum Mucosa Duodenum
3 chr20:24974000-24981000 Weak transcription Psoas Muscle Psoas
4 chr20:24974000-24985800 Weak transcription Primary mononuclear cells fromperipheralblood Blood
5 chr20:24974000-24985800 Weak transcription Thymus Thymus
6 chr20:24974000-24986400 Weak transcription Aorta Aorta
7 chr20:24974200-24985200 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
8 chr20:24974200-24985800 Weak transcription Primary T helper 17 cells PMA-I stimulated --
9 chr20:24974200-24988200 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
10 chr20:24974400-24977600 Enhancers H9 Derived Neuron Cultured Cells ES cell derived
11 chr20:24974400-24977800 Enhancers Placenta Amnion Placenta Amnion
12 chr20:24974400-24978600 Weak transcription Small Intestine intestine
13 chr20:24974400-24981000 Weak transcription Sigmoid Colon Sigmoid Colon
14 chr20:24974400-24983200 Weak transcription Primary T cells from cord blood blood
15 chr20:24974400-24992000 Weak transcription GM12878-XiMat blood
16 chr20:24974800-24985800 Weak transcription Spleen Spleen
17 chr20:24975000-24977800 Enhancers Left Ventricle heart
18 chr20:24975200-24978200 Enhancers Right Ventricle heart
19 chr20:24975200-24981400 Enhancers Fetal Intestine Large intestine
20 chr20:24975400-24978200 Enhancers Fetal Heart heart
21 chr20:24975600-24980400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
22 chr20:24975800-24977800 Enhancers H1 Derived Mesenchymal Stem Cells ES cell derived
23 chr20:24975800-24983200 Weak transcription Primary T helper cells fromperipheralblood blood
24 chr20:24975800-24986400 Weak transcription Primary T helper naive cells from peripheral blood blood
25 chr20:24976000-24977800 Enhancers NHDF-Ad bronchial
26 chr20:24976000-24978000 Enhancers Cortex derived primary cultured neurospheres brain
27 chr20:24976000-24983200 Weak transcription Primary B cells from cord blood blood
28 chr20:24976000-24983200 Weak transcription Primary hematopoietic stem cells blood
29 chr20:24976000-24983200 Weak transcription Fetal Lung lung
30 chr20:24976000-24983400 Weak transcription Primary Natural Killer cells fromperipheralblood blood
31 chr20:24976000-24985000 Weak transcription Primary T helper naive cells fromperipheralblood blood
32 chr20:24976000-24985000 Weak transcription Monocytes-CD14+_RO01746 blood
33 chr20:24976000-24985800 Weak transcription Primary T regulatory cells fromperipheralblood blood
34 chr20:24976000-24985800 Weak transcription Rectal Mucosa Donor 29 rectum
35 chr20:24976000-24986000 Weak transcription Primary T helper cells PMA-I stimulated --
36 chr20:24976000-24986000 Weak transcription Colonic Mucosa Colon
37 chr20:24976000-24986400 Weak transcription Primary hematopoietic stem cells short term culture blood
38 chr20:24976000-24986400 Weak transcription Rectal Mucosa Donor 31 rectum
39 chr20:24976000-24987600 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
40 chr20:24976000-24988000 Weak transcription Primary T killer naive cells fromperipheralblood blood
41 chr20:24976000-24999000 Weak transcription Primary T killer memory cells from peripheral blood blood
42 chr20:24976200-24977600 Enhancers Brain Dorsolateral Prefrontal Cortex brain
43 chr20:24976200-24977600 Enhancers Duodenum Smooth Muscle Duodenum
44 chr20:24976200-24977800 Bivalent Enhancer Foreskin Fibroblast Primary Cells skin01 Skin
45 chr20:24976200-24977800 Enhancers Colon Smooth Muscle Colon
46 chr20:24976200-24978000 Enhancers Skeletal Muscle Male skeletal muscle
47 chr20:24976200-24978000 Enhancers Skeletal Muscle Female skeletal muscle
48 chr20:24976200-24979000 Weak transcription Gastric stomach
49 chr20:24976200-24979200 Weak transcription Stomach Mucosa stomach
50 chr20:24976200-24980800 Weak transcription Ovary ovary

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Last update: Aug 31, 2015