Variant report

Variant	rs6151435
Chromosome Location	chr15:59980984-59980985
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:15)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:15 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:59979537..59981515-chr15:60770595..60772119,2	K562	blood:
2	chr15:59980654..59981595-chr17:57915006..57915812,2	Hela-S3	cervix:
3	chr14:39639709..39640357-chr15:59980652..59981188,2	NB4	blood:
4	chr15:59979548..59984505-chr15:60688391..60691990,7	K562	blood:
5	chr15:59946363..59951356-chr15:59979923..59984049,7	K562	blood:
6	chr15:59980920..59981508-chr2:71295099..71295776,2	Hela-S3	cervix:
7	chr15:59979537..59982042-chr15:60770595..60772312,3	K562	blood:
8	chr15:59980728..59981495-chr2:44222607..44223484,2	Hela-S3	cervix:
9	chr15:59947605..59950537-chr15:59979625..59981765,3	MCF-7	breast:
10	chr15:59970781..59973494-chr15:59980091..59981802,2	MCF-7	breast:
11	chr14:24582979..24583595-chr15:59980787..59981641,2	Hela-S3	cervix:
12	chr15:59945879..59953077-chr15:59978622..59984049,13	K562	blood:
13	chr15:59980562..59981496-chr9:33024819..33025373,2	Hela-S3	cervix:
14	chr15:59979503..59981285-chr3:183330477..183331977,2	K562	blood:
15	chr15:59980114..59982040-chr15:60675665..60677456,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000137074	Chromatin interaction
ENSG00000182718	Chromatin interaction
ENSG00000128915	Chromatin interaction
ENSG00000182400	Chromatin interaction
ENSG00000243584	Chromatin interaction
ENSG00000138095	Chromatin interaction
ENSG00000140299	Chromatin interaction
ENSG00000062716	Chromatin interaction
ENSG00000124357	Chromatin interaction
ENSG00000272735	Chromatin interaction
ENSG00000086061	Chromatin interaction
ENSG00000140307	Chromatin interaction
ENSG00000245534	Chromatin interaction
ENSG00000100897	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10851661	1.00[AMR][1000 genomes]
rs10851662	1.00[AMR][1000 genomes]
rs10851663	1.00[AMR][1000 genomes]
rs11071463	1.00[AMR][1000 genomes]
rs11071464	1.00[AMR][1000 genomes]
rs12101518	1.00[AMR][1000 genomes]
rs12101627	1.00[AMR][1000 genomes]
rs16941555	1.00[AMR][1000 genomes]
rs16941810	1.00[AMR][1000 genomes]
rs1871498	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2307274	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4775196	1.00[AMR][1000 genomes]
rs6151431	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6151476	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6151537	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6151550	1.00[AMR][1000 genomes]
rs6151587	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6494134	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7162788	1.00[AMR][1000 genomes]
rs7180620	1.00[AMR][1000 genomes]
rs74019651	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8039996	1.00[AMR][1000 genomes]
rs8041511	1.00[AMR][1000 genomes]
rs9806322	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527307	chr15:59103328-60018487	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
2	nsv533240	chr15:59858093-59998176	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
3	esv1824522	chr15:59919844-59987181	Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:59977200-59981000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr15:59977800-59981000	Flanking Active TSS	Primary B cells from cord blood	blood
3	chr15:59978200-59981000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
4	chr15:59979600-59981200	Active TSS	Right Atrium	heart
5	chr15:59979600-59982400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr15:59979600-59982400	Active TSS	GM12878-XiMat	blood
7	chr15:59979600-59982400	Active TSS	HSMMtube	muscle
8	chr15:59979800-59982400	Active TSS	HUES6 Cell Line	embryonic stem cell
9	chr15:59979800-59982400	Active TSS	Left Ventricle	heart
10	chr15:59979800-59982600	Active TSS	HUES48 Cell Line	embryonic stem cell
11	chr15:59979800-59982600	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr15:59980000-59982200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr15:59980000-59982200	Active TSS	Colonic Mucosa	Colon
14	chr15:59980000-59982200	Active TSS	Lung	lung
15	chr15:59980000-59982400	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr15:59980000-59982400	Active TSS	Fetal Muscle Trunk	muscle
17	chr15:59980000-59982600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr15:59980000-59982600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr15:59980000-59982600	Active TSS	Ovary	ovary
20	chr15:59980200-59981200	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr15:59980200-59982200	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr15:59980200-59982200	Active TSS	Primary monocytes fromperipheralblood	blood
23	chr15:59980200-59982200	Active TSS	Primary B cells from peripheral blood	blood
24	chr15:59980200-59982200	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
25	chr15:59980200-59982200	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
26	chr15:59980200-59982200	Active TSS	Esophagus	oesophagus
27	chr15:59980200-59982200	Active TSS	Gastric	stomach
28	chr15:59980200-59982200	Bivalent/Poised TSS	HepG2	liver
29	chr15:59980200-59982400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
30	chr15:59980200-59982400	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr15:59980200-59982400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr15:59980200-59982400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr15:59980200-59982400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr15:59980200-59982400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr15:59980200-59982400	Active TSS	Muscle Satellite Cultured Cells	--
36	chr15:59980200-59982400	Active TSS	Brain Inferior Temporal Lobe	brain
37	chr15:59980200-59982400	Active TSS	Psoas Muscle	Psoas
38	chr15:59980200-59982400	Active TSS	HSMM	muscle
39	chr15:59980200-59982400	Active TSS	NHLF	lung
40	chr15:59980200-59982600	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
41	chr15:59980200-59982600	Active TSS	Right Ventricle	heart
42	chr15:59980200-59982600	Active TSS	K562	blood
43	chr15:59980200-59982600	Active TSS	NHDF-Ad	bronchial
44	chr15:59980400-59981000	Active TSS	Brain Germinal Matrix	brain
45	chr15:59980400-59981000	Active TSS	Fetal Brain Female	brain
46	chr15:59980400-59982000	Active TSS	Primary hematopoietic stem cells short term culture	blood
47	chr15:59980400-59982200	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr15:59980400-59982200	Active TSS	Primary T cells fromperipheralblood	blood
49	chr15:59980400-59982200	Active TSS	Primary T helper naive cells from peripheral blood	blood
50	chr15:59980400-59982200	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links