Variant report

Variant	rs6151537
Chromosome Location	chr15:59964300-59964301
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr15:59963882-59964403	GM12892	blood:	n/a	n/a
2	POLR2A	chr15:59963378-59964720	K562	blood:	n/a	n/a
3	POLR2A	chr15:59963397-59964747	A549	lung:	n/a	n/a
4	POLR2A	chr15:59963950-59964328	GM12891	blood:	n/a	n/a
5	POLR2A	chr15:59964220-59964343	ProgFib	skin:	n/a	n/a
6	POLR2A	chr15:59963850-59964352	GM12878	blood:	n/a	n/a
7	POLR2A	chr15:59964287-59964332	Hela-S3	cervix:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:59948214..59950768-chr15:59963899..59966386,2	K562	blood:

Variant related genes	Relation type
PIGHP1	TF binding region
BNIP2	TF binding region
ENSG00000140307	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10851661	1.00[AMR][1000 genomes]
rs10851662	1.00[AMR][1000 genomes]
rs10851663	1.00[AMR][1000 genomes]
rs11071463	1.00[AMR][1000 genomes]
rs11071464	1.00[AMR][1000 genomes]
rs12101518	1.00[AMR][1000 genomes]
rs12101627	1.00[AMR][1000 genomes]
rs16941555	1.00[AMR][1000 genomes]
rs16941810	1.00[AMR][1000 genomes]
rs1871498	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2307274	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4775196	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6151431	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6151435	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6151476	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6151550	1.00[AMR][1000 genomes]
rs6151587	0.80[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6494134	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7162788	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7180507	1.00[AMR][1000 genomes]
rs7180620	1.00[AMR][1000 genomes]
rs74019651	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8039996	1.00[AMR][1000 genomes]
rs8041511	1.00[AMR][1000 genomes]
rs9806322	0.80[YRI][hapmap];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527307	chr15:59103328-60018487	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
2	nsv533240	chr15:59858093-59998176	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
3	esv1824522	chr15:59919844-59987181	Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	nsv1043693	chr15:59944471-59971500	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:59949800-59968000	Weak transcription	Stomach Mucosa	stomach
2	chr15:59949800-59968400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr15:59949800-59980000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr15:59950200-59967800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr15:59950200-59968400	Weak transcription	Right Ventricle	heart
6	chr15:59950200-59968800	Weak transcription	Aorta	Aorta
7	chr15:59950400-59965600	Weak transcription	Brain Substantia Nigra	brain
8	chr15:59950400-59968800	Weak transcription	Esophagus	oesophagus
9	chr15:59950400-59979600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr15:59951000-59978400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr15:59951400-59964600	Strong transcription	HUVEC	blood vessel
12	chr15:59951400-59965400	Strong transcription	Rectal Mucosa Donor 31	rectum
13	chr15:59951400-59972600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr15:59951400-59973600	Strong transcription	Muscle Satellite Cultured Cells	--
15	chr15:59951400-59973600	Strong transcription	HSMM	muscle
16	chr15:59951400-59975000	Strong transcription	Primary neutrophils fromperipheralblood	blood
17	chr15:59951400-59975200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr15:59951400-59975400	Strong transcription	Monocytes-CD14+_RO01746	blood
19	chr15:59951400-59976000	Strong transcription	Primary monocytes fromperipheralblood	blood
20	chr15:59951400-59978800	Strong transcription	HUES64 Cell Line	embryonic stem cell
21	chr15:59951600-59976400	Strong transcription	Duodenum Mucosa	Duodenum
22	chr15:59951800-59975000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr15:59951800-59975600	Strong transcription	Primary B cells from cord blood	blood
24	chr15:59952000-59975600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr15:59952000-59976600	Strong transcription	Primary B cells from peripheral blood	blood
26	chr15:59952000-59977800	Strong transcription	Hela-S3	cervix
27	chr15:59952200-59969800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr15:59952200-59974800	Strong transcription	HUES6 Cell Line	embryonic stem cell
29	chr15:59952200-59974800	Strong transcription	Rectal Mucosa Donor 29	rectum
30	chr15:59952200-59975400	Strong transcription	Fetal Thymus	thymus
31	chr15:59952200-59975600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr15:59952200-59976400	Strong transcription	Placenta	Placenta
33	chr15:59952400-59974800	Strong transcription	Fetal Intestine Large	intestine
34	chr15:59952400-59975800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
35	chr15:59952400-59977400	Strong transcription	Primary T cells fromperipheralblood	blood
36	chr15:59952400-59978600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr15:59952600-59975600	Strong transcription	Primary T helper cells PMA-I stimulated	--
38	chr15:59952600-59976000	Strong transcription	Primary T helper cells fromperipheralblood	blood
39	chr15:59952600-59976800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
40	chr15:59952800-59966600	Strong transcription	Liver	Liver
41	chr15:59952800-59977400	Strong transcription	Dnd41	blood
42	chr15:59954200-59973600	Strong transcription	A549	lung
43	chr15:59954200-59975200	Strong transcription	HUES48 Cell Line	embryonic stem cell
44	chr15:59955000-59974400	Strong transcription	Adipose Nuclei	Adipose
45	chr15:59955200-59966400	Weak transcription	K562	blood
46	chr15:59955800-59974800	Strong transcription	Osteobl	bone
47	chr15:59956200-59974800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
48	chr15:59956200-59975600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr15:59956600-59965200	Strong transcription	HepG2	liver
50	chr15:59956600-59975600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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