Variant report

Variant	rs6151476
Chromosome Location	chr15:59975663-59975664
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:59975500..59977075-chr15:60777726..60779647,2	K562	blood:
2	chr15:59974949..59977182-chr15:59979854..59981914,2	MCF-7	breast:
3	chr15:59947943..59950791-chr15:59975070..59977173,2	K562	blood:

Variant related genes	Relation type
ENSG00000140307	Chromatin interaction
ENSG00000140299	Chromatin interaction
ENSG00000259238	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10851661	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs10851662	1.00[AMR][1000 genomes]
rs10851663	1.00[AMR][1000 genomes]
rs11071463	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs11071464	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs12101518	1.00[AMR][1000 genomes]
rs12101627	1.00[AMR][1000 genomes]
rs16941555	1.00[AMR][1000 genomes]
rs16941810	1.00[AMR][1000 genomes]
rs1871498	1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2307274	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4775196	1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6151431	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6151435	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6151537	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6151550	1.00[AMR][1000 genomes]
rs6151587	0.93[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6494134	1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7162788	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7180507	1.00[AMR][1000 genomes]
rs7180620	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs74019651	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8039996	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs8041511	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs9806322	1.00[YRI][hapmap];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527307	chr15:59103328-60018487	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
2	nsv533240	chr15:59858093-59998176	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
3	esv1824522	chr15:59919844-59987181	Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:59949800-59980000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr15:59950400-59979600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr15:59951000-59978400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr15:59951400-59976000	Strong transcription	Primary monocytes fromperipheralblood	blood
5	chr15:59951400-59978800	Strong transcription	HUES64 Cell Line	embryonic stem cell
6	chr15:59951600-59976400	Strong transcription	Duodenum Mucosa	Duodenum
7	chr15:59952000-59976600	Strong transcription	Primary B cells from peripheral blood	blood
8	chr15:59952000-59977800	Strong transcription	Hela-S3	cervix
9	chr15:59952200-59976400	Strong transcription	Placenta	Placenta
10	chr15:59952400-59975800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
11	chr15:59952400-59977400	Strong transcription	Primary T cells fromperipheralblood	blood
12	chr15:59952400-59978600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr15:59952600-59976000	Strong transcription	Primary T helper cells fromperipheralblood	blood
14	chr15:59952600-59976800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
15	chr15:59952800-59977400	Strong transcription	Dnd41	blood
16	chr15:59957800-59977200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr15:59960800-59976200	Strong transcription	NHDF-Ad	bronchial
18	chr15:59961600-59976800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr15:59962000-59979400	Weak transcription	Fetal Heart	heart
20	chr15:59965000-59980200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
21	chr15:59966400-59976400	Strong transcription	K562	blood
22	chr15:59966600-59976000	Strong transcription	Rectal Mucosa Donor 31	rectum
23	chr15:59967200-59976200	Weak transcription	Pancreatic Islets	Pancreatic Islet
24	chr15:59968000-59976400	Strong transcription	NHLF	lung
25	chr15:59968200-59979600	Weak transcription	Fetal Brain Male	brain
26	chr15:59969600-59977600	Weak transcription	Stomach Mucosa	stomach
27	chr15:59969600-59978400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr15:59969600-59980000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr15:59969800-59976800	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr15:59970200-59976000	Weak transcription	Small Intestine	intestine
31	chr15:59970200-59978400	Weak transcription	Psoas Muscle	Psoas
32	chr15:59970600-59979800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
33	chr15:59970800-59979800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
34	chr15:59971600-59975800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
35	chr15:59972400-59976000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
36	chr15:59973000-59977600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr15:59973200-59979600	Weak transcription	Placenta Amnion	Placenta Amnion
38	chr15:59973400-59980000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
39	chr15:59973600-59976600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
40	chr15:59973600-59976600	Weak transcription	A549	lung
41	chr15:59973600-59977000	Weak transcription	Muscle Satellite Cultured Cells	--
42	chr15:59973600-59977000	Weak transcription	Brain Hippocampus Middle	brain
43	chr15:59973600-59977800	Weak transcription	HSMM	muscle
44	chr15:59973600-59980000	Weak transcription	H9 Cell Line	embryonic stem cell
45	chr15:59973600-59980000	Weak transcription	Brain Inferior Temporal Lobe	brain
46	chr15:59973600-59980000	Weak transcription	Esophagus	oesophagus
47	chr15:59973800-59977800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr15:59973800-59977800	Weak transcription	Brain Anterior Caudate	brain
49	chr15:59973800-59978200	Weak transcription	Fetal Kidney	kidney
50	chr15:59973800-59978400	Weak transcription	Brain Germinal Matrix	brain

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